26becc145e422e03b2b441380aec31c1fa30e564
gperez2
  Tue Apr 23 17:04:50 2024 -0700
Removing the hgHubConnect.remakeTrackHub=on setting from the hgTrackHubHelp page since it is an internal flag, refs #2110

diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
index 30fb62e..429be55 100755
--- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
+++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
@@ -282,32 +282,30 @@
 <a href="/cgi-bin/hgTracks?db=hg38&hubUrl=https://storage.googleapis.com/gcp.wenglab.org/hubs/dna20/hub.txt&hubUrl=http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hub.txt&hubUrl=https://remap.univ-amu.fr/storage/public/hubReMap2022/hub.txt" target="_blank">https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hubUrl=https://storage.googleapis.com/gcp.wenglab.org/hubs/dna20/hub.txt&hubUrl=http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hub.txt&hubUrl=https://remap.univ-amu.fr/storage/public/hubReMap2022/hub.txt</a></pre>
 
 <h3>Creating a URL for an Assembly Hub</h3>
 
 <p>
 The following example links to an assembly hub using the <code>hubUrl=</code> and
 <code>genome=</code> parameters where in the example, <code>genome=araTha1</code>, is the assembly
 name set for <code>genome</code> in the genomes.txt file. URL parameters can be combined by using <code>&amp;</code>.</p>
 <pre><a href=../cgi-bin/hgTracks?genome=araTha1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt>https://genome.ucsc.edu/cgi-bin/hgTracks?genome=araTha1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt</a></pre>
 </p>
 <h6>Additional hub connection parameters</h6>
 <ul>
 <li id="hubClear"><code>hubClear=</code>connects the hub and disconnects other hubs that are in the same directory</li>
 <li id=hgHubConnect><code>hgHubConnect</code>Replacing <code>hgTracks</code> with this parameter connects the hub and redirects the link to the
 <a href="https://genome.ucsc.edu/cgi-bin/hgHubConnect#unlistedHubs" target="_blank">Track Data Hubs</a> page</li>
-<li id="hgHubConnect.remakeTrackHub"><code>hgHubConnect.remakeTrackHub=on</code>
-acts to connect when pointed to /hgHubConnect</li>
 <li id="hgHub_do_firstDb"><code>hgHub_do_firstDb=1</code>
 uses the first database in genomes.txt</li>
 <li id="hgHub_do_redirect"><code>hgHub_do_redirect=on</code>
 redirects the attached hub to the Gateway page</li>
 </ul>
 <h6>Redirecting the URL to the Gateway page</h6>
 <p>
 The following example link connects the hub and redirects the link to the Gateway page to display
 the hub's description html page, which is defined in the genomes.txt by the <code>htmlPath</code>
 setting, by using <code>hgHubConnect</code>, <code>hgHub_do_redirect=on</code>,
 <code>hgHubConnect.remakeTrackHub=on</code>, <code>hgHub_do_firstDb=1</code>, and
 <code>hubUrl</code>.
 </ul>
 <pre><code><a href="http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt"
 target="_blank">http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&<strong>hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt</strong></a></code>