a6aaa3139f34f741d82d14c803bedef875620530
gperez2
  Tue Apr 23 11:05:31 2024 -0700
Removing hg19 gnomadExomesTest track that was used for QA testing, refs #32916

diff --git src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
index 81cc8a4..10ae796 100644
--- src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
@@ -922,61 +922,30 @@
     filterValues.FILTER PASS,InbreedingCoeff,RF,AC0
     filterType.FILTER multipleListAnd
     filterValuesDefault.FILTER PASS
     filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
     filterType.variation_type multipleListOr
     filter.AF 0.0
     filterLabel.AF Minor Allele Frequency Filter
     maxItems 50000
     mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt); Genes: $genes; Type: $annot; Tag: $FILTER; Allele Frequency: $AF ($AC/$AN)
     url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r2_1&ignore=$<rsId>
     urlLabel View this variant at gnomAD
     detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.exomes.popTable.txt
     html gnomadExomesGenomes
     pennantIcon Updated red ../goldenPath/newsarch.html#032624 "Updated Mar. 26, 2024"
 
-    track gnomadExomesTest
-    shortLabel TEST gnomAD Exomes Variants
-    longLabel TEST Genome Aggregation Database (gnomAD) Exome Variants v2.1.1
-    itemRgb on
-    type bigBed 9 +
-    bigDataUrl /gbdb/hg19/gnomAD/variants/v2.1.1.exomes.test.bb
-    parent gnomadSuper
-    visibility squish
-    dataVersion Release 2.1.1
-    labelFields rsId,_displayName
-    defaultLabelFields _displayName
-    skipFields _displayName
-    skipEmptyFields on
-    filterValues.AC_non_cancer Non-Cancer
-    filterValuesDefault.AC_non_cancer Non-Cancer
-    filterType.AC_non_cancer single
-    filterValues.annot pLoF,missense,synonymous,other
-    filterValues.FILTER PASS,InbreedingCoeff,RF,AC0
-    filterType.FILTER multipleListAnd
-    filterValuesDefault.FILTER PASS
-    filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
-    filterType.variation_type multipleListOr
-    filter.AF 0.0
-    filterLabel.AF Minor Allele Frequency Filter
-    maxItems 50000
-    mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt); Genes: $genes; Type: $annot; Tag: $FILTER; Allele Frequency: $AF ($AC/$AN)
-    url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r2_1&ignore=$<rsId>
-    urlLabel View this variant at gnomAD
-    detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.exomes.popTable.txt
-    html gnomadExomesGenomes
-
 searchTable pliByTranscript
 searchType bigBed
 searchDescription gnomAD Loss of Function Metrics by Transcript
 
 searchTable pliByGene
 searchType bigBed
 searchDescription gnomAD Loss of Function Metrics by Gene
 
 searchTable gnomadSvFull
 searchType bigBed
 searchDescription gnomAD Structural Variants - All structural variants
 
 searchTable gnomadSvNonneuro
 searchType bigBed
 searchDescription gnomAD Structural Variants - Non-neuro structural variants