a8d8d0e805bc550786aef8570670c5d16ffb65ee mspeir Sun Apr 28 18:32:11 2024 -0700 updated index, added gb101.md stub, added page_template.md refs #30335 diff --git docs/index.md docs/index.md index e7b941f..f1873bb 100644 --- docs/index.md +++ docs/index.md @@ -1,40 +1,69 @@ -% A sample Markdown page - -[comment]: <> (QA: This is a comment, it will not appear in the HTML) - -# Overview of the Genome Browser - -The genome browser requires humans: - -- sample unnumbered list line 1 -- item 2 and `backticks` - -# Requirements - -A bulleted list: - -* There -* Here -* 'with links' map plotting tools <http://www.soest.hawaii.edu/gmt/> -* Redhat/Fedora/CentOS: `yum install libpng12 httpd ghostscript GMT hdf5 R libuuid-devel MySQL-python` - -A command: - - rsync -hna --stats rsync://hgdownload.soe.ucsc.edu/gbdb/ | egrep "Number of files:|total size is" - -A list and code under it: - -1. Topic 1 - - XBitHack on - <Directory /usr/local/apache/htdocs> - Options +Includes - </Directory> - -2. Topic 2 - - mysql -u browser -pgenome -e 'show tables;' mysql - - MariaDB can be run from the command line, and - the tables from the database MariaDB can be displayed. - +% Genome Browser Tutorials + +# UCSC Genome Browser Help + +The UCSC Genome Browser allows scientists to visualize genomic data from a wide variety of sources, +including BLAH BLAH BLAH, on the genome of their choice. Alongside publicly available data, the +Genome Browser allows for the visualization of one's own data and BLAH. + +## Tutorials + + +Here are some tutorials on the UCSC Genome Browser and some of our most popular +tools to get you started. Each tutorial includes annotated screenshots, a step-by-step walkthrough +of a basic query, and BLAH. + + +<div class="row" style="padding-top: 15px"> +<div class="col-md-6"> +<div class="panel panel-default" style="padding-bottom: 10px"> +<h3 class="panel-title" style="width: -webkit-fill-available;" +>Genome Browser 101</h3> + +Learn how to use the UCSC Genome Browser! (15 min) + +<p style="text-align: end"> +<button>[View Tutorial](gb101.html)</button> +</p> +</div> +</div> +<div class="col-md-6"> +<div class="panel panel-default" style="padding-bottom: 10px"> +<h3 class="panel-title" style="width: -webkit-fill-available;" +>Table Browser Tutorial</h3> + +Learn the basics of querying the UCSC Table Browser! (15 min) + +<p style="text-align: end"> +<button>[View Tutorial](tb101.html)</button> +</p> +</div> +</div> +</div> + +<div class="row" style="padding-top: 15px"> +<div class="col-md-6"> +<div class="panel panel-default" style="padding-bottom: 10px"> +<h3 class="panel-title" style="width: -webkit-fill-available;" +>Configuring the Genome Browser Display</h3> + +Learn the ins and outs of configurng the Genome Browser display (15 min) + +<p style="text-align: end"> +<button>[View Tutorial](gbConfig.html)</button> +</p> +</div> +</div> +<div class="col-md-6"> +<div class="panel panel-default" style="padding-bottom: 10px"> +<h3 class="panel-title" style="width: -webkit-fill-available;" +>Custom Track Basics</h3> + +Learn how to load, update, and manage your custom tracks! (15 min) + +<p style="text-align: end"> +<button>[View Tutorial](ctBasics.html)</button> +</p> +</div> +</div> +</div>