a8d8d0e805bc550786aef8570670c5d16ffb65ee
mspeir
Sun Apr 28 18:32:11 2024 -0700
updated index, added gb101.md stub, added page_template.md refs #30335
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+% Genome Browser Tutorials
+
+# Introduction to the UCSC Genome Browser
+
+This page attempts to introduce you to the basics of using the UCSC Genome Browser including:
+
+- Basic Navigation
+- Basic Table Browser Query
+- Basic BLAT Query
+
+## Sections
+
+Use the sections below to learn about the UCSC Genome Browser interface.
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Genome Browser Interface
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+Annotated screenshot of the Genome Browser interface. Explains what all the buttons do
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Guided Workthrough
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+Explains the basis of using/navigating the Genome Browser interface.
+Also explains a very basic Table Browser query and BLAT query.
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Interactive Tutorial
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+Steps you through the basic functionality in the Genome Browser itself.
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+## Annotated Screenshot
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+
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+| Item | Explanation |
+|------|-------------|
+| Menu | Find BLAH |
+
+(Wee need something below the table otherwise later markdown isn't properly interpreted)
+
+## Guided Workthorugh
+
+This walkthrough will take you through the basic Genome Browser functionality.
+
+By the end of the workthrough you should be able to do these three things:
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+1. Naviagte the Genome Browser Interface
+2. Perform a basic Table Browser query
+3. Perform a simple BLAT query
+
+### Genome Browser Basics
+
+In this guided walkthrough, we go from selecting our genome (hg38 in this
+case), to going to our gene of interest (BLAH), to turning off and on some of
+our favorite tracks, before finally BLAH.
+
+#### Step 1: Choose your genome
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+Go to BLAH, select your genome from the diagram or search for in the search box at the top left of the screen.
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+For this walkthrough, we will select "Human" and stick with the default GRCh38/hg38 assembly.
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+#### Step 2: Navigate to your gene of interest
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+After selecting a genome, enter a gene name into the search box. In our case,
+we will enter "HUNK", a gene for BLAH, into the search box.
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+After typing in the name, select the gene name "HUNK" from the list that
+appears below the search box. You will be taken directly to that gene location.
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