gc-stats.pl Test Results (summary stats from gene-check results)
Results grouped by database and gene prediction track
Full reports for each result located at:
Test Reports
Instructions gene-check and gc-stats.pl are in this doc:
Test Protocol
| db.genePreds |
Date |
Server |
#Seqs |
#Preds |
#Preds having >=1 exceptions (%Preds) |
#Seqs having all Preds =0 exceptions (%Seqs) |
#Seqs having all Preds >=1 exceptions (%Seqs) |
#Seqs having mixed Preds, both =0 and >=1 exceptions (%Seqs) |
Exception Summary: #Seqs(%Seqs) |
| gap |
badCdsSplice |
badUtrSplice |
noCDS |
noStart |
noStop |
inFrameStop |
frameDiscontig |
frameMismatch |
badFrame |
other |
| hg16.knownGene |
050119 |
dev |
42026 |
43232 |
17878(41.4%) |
24816(59.0%) |
17103(40.7%) |
107(0.3%) |
1010(2.4%) |
2741(6.5%) |
1859(4.4%) |
0(0.0%) |
9330(22.2%) |
10074(24.0%) |
758(1.8%) |
0(0.0%) |
0(0.0%) |
8715(20.7%) |
2(0.0%) |
| hg17.knownGene |
050119 |
dev |
43072 |
44338 |
17929(40.4%) |
25834(60.0%) |
17129(39.8%) |
109(0.3%) |
561(1.3%) |
2792(6.5%) |
1895(4.4%) |
0(0.0%) |
9584(22.3%) |
9657(22.4%) |
764(1.8%) |
0(0.0%) |
0(0.0%) |
8087(18.8%) |
2(0.0%) |
| hg16.mgcGenes |
050119 |
dev |
17894 |
18877 |
3198(16.9%) |
15222(85.1%) |
2553(14.3%) |
119(0.7%) |
119(0.7%) |
649(3.6%) |
370(2.1%) |
71(0.4%) |
115(0.6%) |
582(3.3%) |
98(0.5%) |
166(0.9%) |
1469(8.2%) |
512(2.9%) |
2(0.0%) |
| hg17.mgcGenes |
050114 |
dev |
17919 |
18579 |
2812(15.1%) |
15318(85.5%) |
2475(13.8%) |
126(0.7%) |
118(0.7%) |
617(3.4%) |
364(2.0%) |
70(0.4%) |
92(0.5%) |
496(2.8%) |
95(0.5%) |
171(1.0%) |
1418(7.9%) |
429(2.4%) |
2(0.0%) |
| hg16.genscan |
050119 |
dev |
42974 |
42974 |
1037(2.4%) |
41937(97.6%) |
1037(2.4%) |
0(0.0%) |
604(1.4%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
297(0.7%) |
318(0.7%) |
7(0.0%) |
0(0.0%) |
0(0.0%) |
264(0.6%) |
2(0.0%) |
| hg17.genscan |
050114 |
dev |
42807 |
42807 |
956(2.2%) |
41851(97.8%) |
956(2.2%) |
0(0.0%) |
612(1.4%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
244(0.6%) |
251(0.6%) |
7(0.0%) |
0(0.0%) |
0(0.0%) |
216(0.5%) |
2(0.0%) |
| hg16.acembly |
050119 |
dev |
222699 |
222699 |
192809(86.6%) |
29890(13.4%) |
192809(86.6%) |
0(0.0%) |
11515(5.2%) |
23112(10.4%) |
19801(8.9%) |
979(0.4%) |
138330(62.1%) |
33959(15.2%) |
93(0.0%) |
68060(30.6%) |
122850(55.2%) |
9051(4.1%) |
2(0.0%) |
| hg17.acembly |
050125 |
dev |
260445 |
260445 |
195698(75.1%) |
64747(24.9%) |
195698(75.1%) |
0(0.0%) |
5478(2.1%) |
28447(10.9%) |
20352(7.8%) |
0(0.0%) |
170275(65.4%) |
43682(16.8%) |
1022(0.4%) |
0(0.0%) |
0(0.0%) |
7400(2.8%) |
2(0.0%) |
| hg17.exonWalk |
051020 |
dev |
77313 |
77313 |
19354(25.0%) |
57959(75.0%) |
19354(25.0%) |
0(0.0%) |
28(0.0%) |
200(0.3%) |
13(0.0%) |
0(0.0%) |
11857(15.3%) |
10928(14.1%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
7517(9.7%) |
2(0.0%) |
| hg17.ccdsGene |
050324 |
dev |
14794 |
14814 |
0(0.0%) |
14794(100.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
2(0.0%) |
| ce2.geneid |
050324 |
dev |
22298 |
22298 |
9(0.0%) |
22289(100.0%) |
9(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
7(0.0%) |
5(0.0%) |
1(0.0%) |
0(0.0%) |
0(0.0%) |
4(0.0%) |
2(0.0%) |
| mm5.genscan |
050407 |
dev |
45853 |
45853 |
1133(2.5%) |
44720(97.5%) |
1133(2.5%) |
0(0.0%) |
495(1.1%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
474(1.0%) |
462(1.0%) |
8(0.0%) |
0(0.0%) |
0(0.0%) |
398(0.9%) |
2(0.0%) |
| mm6.genscan |
050407 |
dev |
45454 |
45454 |
622(1.4%) |
44832(98.6%) |
622(1.4%) |
0(0.0%) |
480(1.1%) |
0(0.0%) |
0(0.0%) |
0(0.0%) |
101(0.2%) |
101(0.2%) |
10(0.0%) |
0(0.0%) |
0(0.0%) |
89(0.2%) |
2(0.0%) |
| mm5.mgcGenes |
050407 |
dev |
14890 |
17256 |
4772(27.7%) |
11957(80.3%) |
2737(18.4%) |
196(1.3%) |
252(1.7%) |
1165(7.8%) |
723(4.9%) |
217(1.5%) |
575(3.9%) |
1507(10.1%) |
222(1.5%) |
0(0.0%) |
0(0.0%) |
1373(9.2%) |
2(0.0%) |
| mm6.mgcGenes |
050407 |
dev |
14890 |
16097 |
3114(19.3%) |
12521(84.1%) |
2198(14.8%) |
171(1.1%) |
249(1.7%) |
911(6.1%) |
543(3.6%) |
186(1.2%) |
422(2.8%) |
1080(7.3%) |
154(1.0%) |
0(0.0%) |
0(0.0%) |
989(6.6%) |
2(0.0%) |