ftp://ftp.ccb.jhu.edu/pub/software/phylocsfpp/hub.txt PhyloCSF++ Evolutionary protein-coding potential as measured by PhyloCSF++ 2021-03-16 15:33:41 5 rn6,fr3,gasAcu1,tarSyr2,sacCer3, ftp://ftp.ccb.jhu.edu/pub/software/phylocsfpp/hub.html
ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/hub.txt rfam12_ncRNA Rfam 12.0 non-coding RNA annotation 2015-05-06 11:32:56 8 hg38,mm10,ce10,galGal4,ci2,danRer7,dm6,sacCer3, ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/hub_description.html
http://augustus.uni-greifswald.de/hubs/argiope/hub.txt Wasp spider hub This is the assembly hub of the wasp spider (Argiope bruennichi) 2020-08-26 07:08:09 1 argiope, http://augustus.uni-greifswald.de/hubs/argiope/aboutHub.html
http://augustus.uni-greifswald.de/hubs/pisaster/hub.txt Purple sea star Assembly Hub This is the Assembly Hub of the purple sea star (Pisaster ochraceus, assembly 12Jun2017_28pcJ) 2019-04-15 11:07:43 1 12Jun2017_28pcJ, http://augustus.uni-greifswald.de/hubs/pisaster/aboutHub.html
http://bx.psu.edu/~yuzhang/Roadmap_ideas/ideas_hub.txt IDEAS roadmap 20states Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm 2017-10-04 14:19:48 1 hg19, https://academic.oup.com/nar/article/45/17/9823/4056234/Accurate-and-reproducible-functional-maps-in-127
http://cotneylab.cam.uchc.edu/~jcotney/HEART_HUB/heart_hub.txt Cotney Lab Human Embryonic Heart Hub Human Embryonic Heart Tissue Epigenomic and Transcriptomic Data from the Cotney Lab at UConn Health 2020-03-18 11:58:57 2 hg19,hg38, http://cotney.research.uchc.edu
http://dbrip.org/dbRIPHub/hub.txt dbRIP_Hub "dbRIP: Database of Polymorphic and Species-specific Retrotransposons in Humans" 2018-05-04 10:40:26 2 hg19,hg38, http://dbrip.org/dbRIPHub/dbRIP_Hub.html
http://epigenomesportal.ca/hub/hub.txt McGill EMC (CEEHRC) McGill Epigenomics Mapping Centre, Montreal, Quebec, Canada 2013-12-09 16:46:28 1 hg19, NULL
http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hub.txt JASPAR TFBS TFBS predictions for profiles in the JASPAR CORE collections 2017-09-27 09:59:05 12 hg19,hg38,ce10,ce11,ci3,dm6,sacCer3,danRer10,danRer11,mm10,mm39,araTha1, http://jaspar.genereg.net/genome-tracks/
http://fantom.gsc.riken.jp/5/datahub/hub.txt FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data 2014-08-11 16:10:40 8 hg38,mm10,hg19,mm9,canFam3,rn6,rheMac8,galGal5, https://fantom.gsc.riken.jp/5/datahub/description.html
http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt FANTOM5 CAGE RECLU DATA RIKEN FANTOM5 CAGE clusters by RECLU 2014-09-09 10:58:04 2 hg19,hg18, http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/
http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt Blueprint Hub Blueprint Epigenomics Data Hub 2013-07-23 11:43:54 1 hg38, http://www.blueprint-epigenome.eu/index.cfm?p=31AD6D30-9B3C-BB97-E7F81875121FEC41
http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt ENCODE Analysis Hub ENCODE Integrative Analysis Data Hub 2012-09-04 12:24:47 1 hg19, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439153/
http://ftp.ebi.ac.uk/pub/databases/gencode/covid19_trackhub/hub.txt COVID-19 Gene Annotation GENCODE annotation of COVID-19 associated genes 2020-05-29 14:52:43 1 hg38, http://ftp.ebi.ac.uk/pub/databases/gencode/covid19_trackhub/COVID19_Hub.html
http://ftp.ebi.ac.uk/pub/databases/gencode/update_trackhub/hub.txt GENCODE Annotation Updates Updates to GENCODE manual annotation since last release 2020-09-23 16:32:58 3 hg38,mm39,mm10, http://ftp.ebi.ac.uk/pub/databases/gencode/update_trackhub/GENCODE_Updates.html
http://ftp.ensembl.org/pub/papers/regulation/hub.txt Ensembl Regulatory Build Evidence summaries and provisional results for the new Ensembl Regulatory Build 2014-09-22 13:18:24 3 hg38,hg19,mm10, http://ensembl.org/info/genome/funcgen/regulatory_build.html
http://gengastro.med.tu-dresden.de/suppl/footprint/Hub/tisHub.txt Translation Initiation Sites (TIS) Translation Initiation Sites (TIS) track 2013-04-03 10:14:16 1 hg19, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483550/
http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Ultraconserved Elements Ultra conserved Elements in the Human Genome. Science 304(5675) pp.1321-1325 (2004) 2014-01-23 16:10:02 1 hg19, http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/ultraConserved.html
http://hgdownload.soe.ucsc.edu/hubs/gtex/hub.txt GTEx RNA-seq Signal Hub RNA-seq read coverage in 53 tissues from GTEx V6 (7572 samples) 2016-06-01 17:47:11 2 hg19,hg38, http://hgdownload.soe.ucsc.edu/hubs/gtex/gtexHub.html
http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/hub.txt GTEx Analysis Hub Genotype Tissue Expression (GTEx) Project Analysis Hub 2016-08-29 13:48:38 2 hg19,hg38, http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/gtexAnalysisHub.html
http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt Mouse strain assemblies Assembly and alignment data for 16 different mouse strains plus rat. 2017-06-30 14:08:24 18 mm10,rn6,129S1_SvImJ,WSB_EiJ,SPRET_EiJ,AKR_J,DBA_2J,CBA_J,A_J,C57BL_6NJ,CAST_EiJ,PWK_PhJ,LP_J,C3H_HeJ,NZO_HlLtJ,NOD_ShiLtJ,FVB_NJ,BALB_cJ, http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hubIndex.html
http://hgdownload.soe.ucsc.edu/hubs/neuroDiffCrispr/hubNeuroDiffCrispr.txt Primate x4 NeuroDiff and Human CRISPRa RNAseq coverage tracks from 4 Primate neuro-differentiation assays and a human CRISPRa assay 2018-12-19 16:32:17 4 hg19,panTro4,ponAbe2,rheMac8, http://hgdownload.soe.ucsc.edu/hubs/neuroDiffCrispr/hubNeuroDiffCrispr.html
http://innovebioinfo.com/Annotation/Polytracts/trackHub/hub.txt Polytract Repeats Very Short Tandem Repeats (MNR/DNR/TNR) 2020-02-21 16:20:05 4 hg38,mm10,rn6,dm6, http://innovebioinfo.com/Annotation/Polytracts/Polytract.html
http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt UCD Methylation UCD DNA methylation data 2015-08-07 12:17:53 11 hg19,hg18,mm10,mm9,bosTau7,bosTau6,canFam3,equCab2,monDom5,rheMac2,rheMac3, NULL
http://lisanwanglab.org/DASHR/tracks/hub.txt DASHR small ncRNA Hub DASHR Human small non-coding RNA data 2015-12-20 11:30:47 1 hg19, http://lisanwanglab.org/DASHR/
http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt GRC Genome Issues under Review Genome Reference Consortium: Genome issues and other features 2015-04-02 11:45:33 7 hg38,hg19,mm10,mm9,danRer7,danRer10,danRer11, http://www.ncbi.nlm.nih.gov/pubmed/21750661
http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Vista Enhancers Vista Browser Track Hub 2015-07-29 12:30:05 3 hg19,mm9,mm10, http://enhancer.lbl.gov
http://raw.githubusercontent.com/mhalushka/miRNA-UCSC-hub/master/hub.txt Human cellular microRNAome microRNA RNA-seq based data from 46 primary cell types and 42 cancer or immortalized cell lines. 2017-06-02 14:11:29 1 hg38, http://biorxiv.org/content/early/2017/03/24/120394
http://reftss.clst.riken.jp/trackhub/hub.txt refTSS refTSS 2020-03-06 14:05:02 2 hg38,mm10,
http://remap.univ-amu.fr/storage/public/hubReMap2018/hub.txt ReMap 2018 Regulatory Atlas ReMap 2018: An atlas of regulatory regions from an integrative analysis of Human DNA-binding sequencing experiments. Go to ReMap for more info. Pubmed link. 2017-10-06 13:11:33 1 hg38, http://remap.univ-amu.fr/storage/public/hubReMap2018/remapHub.html
http://remap.univ-amu.fr/storage/public/hubReMap2020UCSC/hub.txt ReMap 2020 Regulatory Atlas ReMap 2020: An atlas of regulatory regions from an integrative analysis of Human and Arabidopsis thaliana DNA-binding sequencing experiments. Go to ReMap for more info. 2019-09-18 13:32:09 2 hg38,araTha1, http://remap.univ-amu.fr/storage/public/hubReMap2020UCSC/remapHub2020.html
http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt ZebrafishGenomics Burgess Lab Zebrafish Genomic Resources 2017-02-03 13:31:58 3 danRer11,danRer10,danRer7, https://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/download.shtml
http://siomilab.sakura.ne.jp/external/hamster_ucsc_browser/hub.txt Golden Hamster genome Genome assembly of Golden Hamster(Mesocricetus auratus) from Siomi lab 2021-12-07 13:48:21 1 MesAur2.0, http://siomilab.sakura.ne.jp/external/hamster_ucsc_browser/MesAur2.0/docs/description.html
http://smithlab.usc.edu/trackdata/methylation/hub.txt DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data 2013-05-28 15:13:19 14 hg38,hg19,hg18,mm9,mm10,panTro2,panTro4,ponAbe2,danRer7,canFam3,rn5,rheMac3,rheMac8,tair10, http://smithlabresearch.org/software/methbase/
http://trackhub.genereg.net/promoterome/hub.txt Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. 2016-03-18 14:14:03 1 danRer7, http://trackhub.genereg.net/promoterome/danRer7/index.html
http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt C_elegans_isolates C. elegans wild isolate assembly hub 2015-05-19 10:09:19 3 CB4856Princeton_JR-contig,CB4856Princeton_cycle20,CB4856Princeton_Contigs, http://www.ncbi.nlm.nih.gov/pubmed/25995208
http://www.3402bioinformaticsgroup.com/wp-content/uploads/2016/07/ucsc_track_hub/hub.txt Xmac Xiphophorus maculatus chromosome assembly version 5.0(SMRT) 2019-10-24 12:23:36 1 X.maculatus, http://www.3402bioinformaticsgroup.com/wp-content/uploads/2016/07/ucsc_track_hub/X.maculatus/description.html
http://www.bcgsc.ca/downloads/edcc/data/CEMT/hub/bcgsc_datahub.txt CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver, B.C. 2013-09-13 16:28:04 2 hg38,hg19, http://www.epigenomes.ca
http://www.bioinf.uni-leipzig.de/Publications/SUPPLEMENTS/20-002/SIHUMI_track_hub/hub.txt SIHUMI simplified human intestinal microbiota HUB 2021-08-11 11:31:43 8 bact,bifi,blautia,anaero,ery,clostri,lacto,ecoli, https://pubmed.ncbi.nlm.nih.gov/34039272/
http://www.informatics.jax.org/downloads/TrackHubs/hub.txt MGI Alleles and Phenotypes Allele's and Phenotypes from the Mouse Genome Informatics (MGI) consortium 2017-10-20 15:11:20 1 mm10, http://www.informatics.jax.org/downloads/TrackHubs/description.html
http://www.mircode.org/ucscHub/hub.txt miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts 2012-09-18 10:18:03 1 hg19, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400968/
http://wyngb.gladstone.org/data/swhalen/pec_mpra/hub.txt PsychENCODE MPRA Hub PsychENCODE MPRA Hub 2023-04-10 15:12:44 1 hg38, https://doi.org/10.1101/2023.02.15.528663
http://younglab.wi.mit.edu/mESC_ChIAPET_hub/hub.txt mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells 2015-11-04 08:07:36 1 mm9, http://younglab.wi.mit.edu/mESC_ChIAPET_hub/description.html
http://zlab-trackhub.umassmed.edu/shulhah/hub.txt UMassMed ZHub UMassMed H3K4me3 ChIP-seq data for Autistic brains 2012-03-02 14:14:27 1 hg19, http://archpsyc.jamanetwork.com/article.aspx?articleid=1107452
https://api.wenglab.org/screen_v13/hubs/dna20/hub.txt ENCODE DNA Trackhub ENCODE Trackhub for DNA-based assays 2020-10-05 16:03:03 3 hg19,hg38,mm10, https://api.wenglab.org/screen_v13/hubs/dna20/description.html
https://api.wenglab.org/screen_v13/hubs/integrative52/hub.txt ENCODE integrative Trackhub ENCODE Trackhub for integrative results 2020-10-05 16:01:44 2 hg38,mm10, https://api.wenglab.org/screen_v13/hubs/integrative52/hub.html
https://api.wenglab.org/screen_v13/hubs/rna22/hub.txt ENCODE RNA Trackhub ENCODE Trackhub for RNA-based assays 2020-10-05 16:00:34 3 hg19,hg38,mm10, https://api.wenglab.org/screen_v13/hubs/rna22/hub.html
https://apprisws.bioinfo.cnio.es/trackHub/hub.txt Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. 2016-02-25 09:24:05 9 hg38,hg19,mm10,danRer10,rn6,susScr3,panTro4,dm6,ce10, https://apprisws.bioinfo.cnio.es/trackHub/docs/trackHub
https://apprisws.bioinfo.cnio.es/trackHubPROTEO/hub.txt Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases 2016-02-05 08:22:02 2 hg38,hg19, https://apprisws.bioinfo.cnio.es/trackHubPROTEO/docs/PROTEO.html
https://bchub.epfl.ch/breastca.txt Breast Cancer Epigenomics Track Hub Breast Cancer Epigenomics Track Hub 2022-11-18 15:39:40 1 hg19, https://bchub.epfl.ch
https://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/hub.txt CESAR Gene Mappings Human Exons mapped by CESAR 2016-04-24 13:04:53 99 bosTau7,ailMel1,allMis1,anoCar2,calJac3,canFam3,cavPor3,cerSim1,chrPic1,criGri1,danRer7,dasNov3,echTel2,equCab2,eriEur2,felCat5,fr3,gadMor1,galGal4,gasAcu1,geoFor1,gorGor3,hetGla2,latCha1,loxAfr3,macEug2,macFas5,melGal1,melUnd1,mm10,monDom5,musFur1,myoLuc2,nomLeu3,ochPri3,oreNil2,ornAna1,oryCun2,oryLat2,otoGar3,oviAri3,panTro4,papHam1,petMar2,ponAbe2,pteVam1,rheMac3,rn5,saiBol1,sarHar1,sorAra2,speTri2,susScr3,taeGut2,tetNig2,triMan1,turTru2,vicPac2,xenTro7,hub.amaVit1,hub.anaPla1,hub.apaSpi1,hub.araMac1,hub.astMex1,hub.camFer1,hub.capHir1,hub.cheMyd1,hub.chiLan1,hub.chlSab1,hub.chrAsi1,hub.colLiv1,hub.conCri1,hub.eleEdw1,hub.eptFus1,hub.falChe1,hub.falPer1,hub.ficAlb2,hub.hapBur1,hub.jacJac1,hub.lepOcu1,hub.lepWed1,hub.mayZeb1,hub.mesAur1,hub.micOch1,hub.myoDav1,hub.neoBri1,hub.octDeg1,hub.odoRosDiv1,hub.orcOrc1,hub.oryAfe1,hub.panHod1,hub.pelSin1,hub.pseHum1,hub.pteAle1,hub.punNye1,hub.takFla1,hub.tupChi1,hub.xipMac1,hub.zonAlb1, https://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/CESAR.html
https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt ChIP-seq data track HUBs from MSC cells from GSE79815 ChIP-seq data from the publication "Epigenetic plasticity drives adipogenic and osteogenic differentiation of marrow-derived mesenchymal stem cells" (10.1074/jbc.M116.736538) from GEO record GSE79815 2016-08-23 16:07:37 1 mm9, http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79815
https://cdn.genecards.org/hubs/genecarna/hub.txt GeneCards ncRNAs An integrated compendium of ncRNA genes in GeneCards 2021-05-03 11:06:41 1 hg38, http://www.genecards.org/Guide/GeneCard/transcripts
https://cdn.genecards.org/hubs/genehancer/hub.txt GeneHancer GeneHancer: genome-wide integration of regulatory elements and target genes in GeneCards 2017-04-07 12:50:33 2 hg38,hg19, http://www.genecards.org/Guide/GeneCard/enhancers
https://cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/hub.txt Bird Alignment (363 species) Bird Alignment (363 species) 2022-01-18 16:21:41 363 Gallus_gallus,Acanthisitta_chloris,Acrocephalus_arundinaceus,Aegithalos_caudatus,Aegotheles_bennettii,Agapornis_roseicollis,Agelaius_phoeniceus,Alaudala_cheleensis,Alca_torda,Aleadryas_rufinucha,Alectura_lathami,Alopecoenas_beccarii,Amazona_guildingii,Anas_platyrhynchos,Anas_zonorhyncha,Anhinga_anhinga,Anhinga_rufa,Anser_cygnoid,Anseranas_semipalmata,Anthoscopus_minutus,Antrostomus_carolinensis,Apaloderma_vittatum,Aphelocoma_coerulescens,Aptenodytes_forsteri,Apteryx_australis,Apteryx_haastii,Apteryx_owenii,Apteryx_rowi,Aquila_chrysaetos,Aramus_guarauna,Ardeotis_kori,Arenaria_interpres,Asarcornis_scutulata,Atlantisia_rogersi,Atrichornis_clamosus,Balaeniceps_rex,Balearica_regulorum,Baryphthengus_martii,Bombycilla_garrulus,Brachypodius_atriceps,Brachypteracias_leptosomus,Bucco_capensis,Buceros_rhinoceros,Bucorvus_abyssinicus,Buphagus_erythrorhynchus,Burhinus_bistriatus,Cairina_moschata,Calcarius_ornatus,Calidris_pugnax,Callaeas_wilsoni,Callipepla_squamata,Caloenas_nicobarica,Calonectris_borealis,Calypte_anna,Calyptomena_viridis,Campylorhamphus_procurvoides,Cardinalis_cardinalis,Cariama_cristata,Casuarius_casuarius,Cathartes_aura,Catharus_fuscescens,Centropus_bengalensis,Centropus_unirufus,Cephalopterus_ornatus,Cepphus_grylle,Cercotrichas_coryphaeus,Certhia_brachydactyla,Certhia_familiaris,Cettia_cetti,Ceuthmochares_aereus,Ceyx_cyanopectus,Chaetops_frenatus,Chaetorhynchus_papuensis,Chaetura_pelagica,Charadrius_alexandrinus,Charadrius_vociferus,Chauna_torquata,Chionis_minor,Chlamydotis_macqueenii,Chloroceryle_aenea,Chlorodrepanis_virens,Chloropsis_cyanopogon,Chloropsis_hardwickii,Chordeiles_acutipennis,Chroicocephalus_maculipennis,Chunga_burmeisteri,Ciccaba_nigrolineata,Ciconia_maguari,Cinclus_mexicanus,Circaetus_pectoralis,Cisticola_juncidis,Climacteris_rufus,Cnemophilus_loriae,Cochlearius_cochlearius,Colinus_virginianus,Colius_striatus,Columba_livia,Columbina_picui,Copsychus_sechellarum,Corvus_brachyrhynchos,Corvus_cornix,Corvus_moneduloides,Corythaeola_cristata,Corythaixoides_concolor,Coturnix_japonica,Crotophaga_sulcirostris,Crypturellus_cinnamomeus,Crypturellus_soui,Crypturellus_undulatus,Cuculus_canorus,Daphoenositta_chrysoptera,Dasyornis_broadbenti,Dicaeum_eximium,Dicrurus_megarhynchus,Donacobius_atricapilla,Dromaius_novaehollandiae,Dromas_ardeola,Drymodes_brunneopygia,Dryoscopus_gambensis,Dyaphorophyia_castanea,Edolisoma_coerulescens,Egretta_garzetta,Elachura_formosa,Emberiza_fucata,Eolophus_roseicapillus,Erithacus_rubecula,Erpornis_zantholeuca,Erythrocercus_mccallii,Eubucco_bourcierii,Eudromia_elegans,Eulacestoma_nigropectus,Eurypyga_helias,Eurystomus_gularis,Falco_cherrug,Falco_peregrinus,Falcunculus_frontatus,Ficedula_albicollis,Formicarius_rufipectus,Fregata_magnificens,Fregetta_grallaria,Fulmarus_glacialis,Furnarius_figulus,Galbula_dea,Gavia_stellata,Geococcyx_californianus,Geospiza_fortis,Glareola_pratincola,Glaucidium_brasilianum,Grallaria_varia,Grantiella_picta,Grus_americana,Gymnorhina_tibicen,Halcyon_senegalensis,Haliaeetus_albicilla,Haliaeetus_leucocephalus,Heliornis_fulica,Hemignathus_wilsoni,Hemiprocne_comata,Herpetotheres_cachinnans,Himantopus_himantopus,Hippolais_icterina,Hirundo_rustica,Horornis_vulcanius,Hydrobates_tethys,Hylia_prasina,Hypocryptadius_cinnamomeus,Ibidorhyncha_struthersii,Ifrita_kowaldi,Illadopsis_cleaveri,Indicator_maculatus,Irena_cyanogastra,Jacana_jacana,Junco_hyemalis,Lanius_ludovicianus,Larus_smithsonianus,Leiothrix_lutea,Lepidothrix_coronata,Leptocoma_aspasia,Leptosomus_discolor,Leucopsar_rothschildi,Limosa_lapponica,Locustella_ochotensis,Lonchura_striata,Lophotis_ruficrista,Loxia_curvirostra,Loxia_leucoptera,Machaerirhynchus_nigripectus,Malurus_elegans,Manacus_manacus,Melanocharis_versteri,Meleagris_gallopavo,Melopsittacus_undulatus,Melospiza_melodia,Menura_novaehollandiae,Merops_nubicus,Mesembrinibis_cayennensis,Mesitornis_unicolor,Mionectes_macconnelli,Mohoua_ochrocephala,Molothrus_ater,Motacilla_alba,Myiagra_hebetior,Mystacornis_crossleyi,Neodrepanis_coruscans,Neopipo_cinnamomea,Nesospiza_acunhae,Nestor_notabilis,Nicator_chloris,Nipponia_nippon,Nothocercus_julius,Nothocercus_nigrocapillus,Nothoprocta_ornata,Nothoprocta_pentlandii,Nothoprocta_perdicaria,Notiomystis_cincta,Numida_meleagris,Nyctibius_bracteatus,Nyctibius_grandis,Nycticryphes_semicollaris,Nyctiprogne_leucopyga,Oceanites_oceanicus,Odontophorus_gujanensis,Oenanthe_oenanthe,Onychorhynchus_coronatus,Opisthocomus_hoazin,Oreocharis_arfaki,Oreotrochilus_melanogaster,Origma_solitaria,Oriolus_oriolus,Orthonyx_spaldingii,Oxylabes_madagascariensis,Oxyruncus_cristatus,Pachycephala_philippinensis,Pachyramphus_minor,Pandion_haliaetus,Panurus_biarmicus,Paradisaea_raggiana,Pardalotus_punctatus,Parus_major,Passer_domesticus,Passerina_amoena,Patagioenas_fasciata,Pedionomus_torquatus,Pelecanoides_urinatrix,Pelecanus_crispus,Penelope_pileata,Peucedramus_taeniatus,Phaethon_lepturus,Phaetusa_simplex,Phainopepla_nitens,Phalacrocorax_auritus,Phalacrocorax_brasilianus,Phalacrocorax_carbo,Phalacrocorax_harrisi,Phalacrocorax_pelagicus,Phasianus_colchicus,Pheucticus_melanocephalus,Phoenicopterus_ruber,Phylloscopus_trochilus,Piaya_cayana,Picathartes_gymnocephalus,Picoides_pubescens,Piprites_chloris,Pitta_sordida,Ploceus_nigricollis,Pluvianellus_socialis,Podargus_strigoides,Podiceps_cristatus,Podilymbus_podiceps,Poecile_atricapillus,Polioptila_caerulea,Pomatorhinus_ruficollis,Pomatostomus_ruficeps,Probosciger_aterrimus,Promerops_cafer,Prunella_fulvescens,Prunella_himalayana,Pseudopodoces_humilis,Psilopogon_haemacephalus,Psophia_crepitans,Pterocles_burchelli,Pterocles_gutturalis,Pteruthius_melanotis,Ptilonorhynchus_violaceus,Ptilorrhoa_leucosticta,Pycnonotus_jocosus,Pygoscelis_adeliae,Quiscalus_mexicanus,Ramphastos_sulfuratus,Regulus_satrapa,Rhabdornis_inornatus,Rhadina_sibilatrix,Rhagologus_leucostigma,Rhea_americana,Rhea_pennata,Rhegmatorhina_hoffmannsi,Rhinopomastus_cyanomelas,Rhinoptilus_africanus,Rhipidura_dahli,Rhodinocichla_rosea,Rhynochetos_jubatus,Rissa_tridactyla,Rostratula_benghalensis,Rynchops_niger,Sagittarius_serpentarius,Sakesphorus_luctuosus,Sapayoa_aenigma,Saxicola_maurus,Sclerurus_mexicanus,Scopus_umbretta,Scytalopus_superciliaris,Semnornis_frantzii,Serilophus_lunatus,Serinus_canaria,Setophaga_coronata,Setophaga_kirtlandii,Sinosuthora_webbiana,Sitta_europaea,Smithornis_capensis,Spizaetus_tyrannus,Spizella_passerina,Sporophila_hypoxantha,Steatornis_caripensis,Stercorarius_parasiticus,Sterrhoptilus_dennistouni,Strix_occidentalis,Struthidea_cinerea,Struthio_camelus,Sturnus_vulgaris,Sula_dactylatra,Sylvia_atricapilla,Sylvia_borin,Sylvietta_virens,Syrrhaptes_paradoxus,Tachuris_rubrigastra,Taeniopygia_guttata,Tauraco_erythrolophus,Thalassarche_chlororhynchos,Thinocorus_orbignyianus,Thryothorus_ludovicianus,Tichodroma_muraria,Tinamus_guttatus,Todus_mexicanus,Toxostoma_redivivum,Tricholaema_leucomelas,Trogon_melanurus,Turnix_velox,Tympanuchus_cupido,Tyrannus_savana,Tyto_alba,Upupa_epops,Uria_aalge,Uria_lomvia,Urocolius_indicus,Urocynchramus_pylzowi,Vidua_chalybeata,Vidua_macroura,Vireo_altiloquus,Xiphorhynchus_elegans,Zapornia_atra,Zonotrichia_albicollis,Zosterops_hypoxanthus,Zosterops_lateralis, https://cgl.gi.ucsc.edu/data/cactus/363-avian-2020-hub/documentation/b10kHubDescription.html
https://cgl.gi.ucsc.edu/data/cactus/605-vertebrate-2020-hub/hub.txt Mammal and Bird Alignment (605 species) Mammal and Bird Alignment (605 species) 2022-01-18 16:15:20 605 Homo_sapiens,Gallus_gallus,Acanthisitta_chloris,Acrocephalus_arundinaceus,Aegithalos_caudatus,Aegotheles_bennettii,Agapornis_roseicollis,Agelaius_phoeniceus,Alaudala_cheleensis,Alca_torda,Aleadryas_rufinucha,Alectura_lathami,Alopecoenas_beccarii,Amazona_guildingii,Anas_platyrhynchos,Anas_zonorhyncha,Anhinga_anhinga,Anhinga_rufa,Anser_cygnoid,Anseranas_semipalmata,Anthoscopus_minutus,Antrostomus_carolinensis,Apaloderma_vittatum,Aphelocoma_coerulescens,Aptenodytes_forsteri,Apteryx_australis,Apteryx_haastii,Apteryx_owenii,Apteryx_rowi,Aquila_chrysaetos,Aramus_guarauna,Ardeotis_kori,Arenaria_interpres,Asarcornis_scutulata,Atlantisia_rogersi,Atrichornis_clamosus,Balaeniceps_rex,Balearica_regulorum,Baryphthengus_martii,Bombycilla_garrulus,Brachypodius_atriceps,Brachypteracias_leptosomus,Bucco_capensis,Buceros_rhinoceros,Bucorvus_abyssinicus,Buphagus_erythrorhynchus,Burhinus_bistriatus,Cairina_moschata,Calcarius_ornatus,Calidris_pugnax,Callaeas_wilsoni,Callipepla_squamata,Caloenas_nicobarica,Calonectris_borealis,Calypte_anna,Calyptomena_viridis,Campylorhamphus_procurvoides,Cardinalis_cardinalis,Cariama_cristata,Casuarius_casuarius,Cathartes_aura,Catharus_fuscescens,Centropus_bengalensis,Centropus_unirufus,Cephalopterus_ornatus,Cepphus_grylle,Cercotrichas_coryphaeus,Certhia_brachydactyla,Certhia_familiaris,Cettia_cetti,Ceuthmochares_aereus,Ceyx_cyanopectus,Chaetops_frenatus,Chaetorhynchus_papuensis,Chaetura_pelagica,Charadrius_alexandrinus,Charadrius_vociferus,Chauna_torquata,Chionis_minor,Chlamydotis_macqueenii,Chloroceryle_aenea,Chlorodrepanis_virens,Chloropsis_cyanopogon,Chloropsis_hardwickii,Chordeiles_acutipennis,Chroicocephalus_maculipennis,Chunga_burmeisteri,Ciccaba_nigrolineata,Ciconia_maguari,Cinclus_mexicanus,Circaetus_pectoralis,Cisticola_juncidis,Climacteris_rufus,Cnemophilus_loriae,Cochlearius_cochlearius,Colinus_virginianus,Colius_striatus,Columba_livia,Columbina_picui,Copsychus_sechellarum,Corvus_brachyrhynchos,Corvus_cornix,Corvus_moneduloides,Corythaeola_cristata,Corythaixoides_concolor,Coturnix_japonica,Crotophaga_sulcirostris,Crypturellus_cinnamomeus,Crypturellus_soui,Crypturellus_undulatus,Cuculus_canorus,Daphoenositta_chrysoptera,Dasyornis_broadbenti,Dicaeum_eximium,Dicrurus_megarhynchus,Donacobius_atricapilla,Dromaius_novaehollandiae,Dromas_ardeola,Drymodes_brunneopygia,Dryoscopus_gambensis,Dyaphorophyia_castanea,Edolisoma_coerulescens,Egretta_garzetta,Elachura_formosa,Emberiza_fucata,Eolophus_roseicapillus,Erithacus_rubecula,Erpornis_zantholeuca,Erythrocercus_mccallii,Eubucco_bourcierii,Eudromia_elegans,Eulacestoma_nigropectus,Eurypyga_helias,Eurystomus_gularis,Falco_cherrug,Falco_peregrinus,Falcunculus_frontatus,Ficedula_albicollis,Formicarius_rufipectus,Fregata_magnificens,Fregetta_grallaria,Fulmarus_glacialis,Furnarius_figulus,Galbula_dea,Gavia_stellata,Geococcyx_californianus,Geospiza_fortis,Glareola_pratincola,Glaucidium_brasilianum,Grallaria_varia,Grantiella_picta,Grus_americana,Gymnorhina_tibicen,Halcyon_senegalensis,Haliaeetus_albicilla,Haliaeetus_leucocephalus,Heliornis_fulica,Hemignathus_wilsoni,Hemiprocne_comata,Herpetotheres_cachinnans,Himantopus_himantopus,Hippolais_icterina,Hirundo_rustica,Horornis_vulcanius,Hydrobates_tethys,Hylia_prasina,Hypocryptadius_cinnamomeus,Ibidorhyncha_struthersii,Ifrita_kowaldi,Illadopsis_cleaveri,Indicator_maculatus,Irena_cyanogastra,Jacana_jacana,Junco_hyemalis,Lanius_ludovicianus,Larus_smithsonianus,Leiothrix_lutea,Lepidothrix_coronata,Leptocoma_aspasia,Leptosomus_discolor,Leucopsar_rothschildi,Limosa_lapponica,Locustella_ochotensis,Lonchura_striata,Lophotis_ruficrista,Loxia_curvirostra,Loxia_leucoptera,Machaerirhynchus_nigripectus,Malurus_elegans,Manacus_manacus,Melanocharis_versteri,Meleagris_gallopavo,Melopsittacus_undulatus,Melospiza_melodia,Menura_novaehollandiae,Merops_nubicus,Mesembrinibis_cayennensis,Mesitornis_unicolor,Mionectes_macconnelli,Mohoua_ochrocephala,Molothrus_ater,Motacilla_alba,Myiagra_hebetior,Mystacornis_crossleyi,Neodrepanis_coruscans,Neopipo_cinnamomea,Nesospiza_acunhae,Nestor_notabilis,Nicator_chloris,Nipponia_nippon,Nothocercus_julius,Nothocercus_nigrocapillus,Nothoprocta_ornata,Nothoprocta_pentlandii,Nothoprocta_perdicaria,Notiomystis_cincta,Numida_meleagris,Nyctibius_bracteatus,Nyctibius_grandis,Nycticryphes_semicollaris,Nyctiprogne_leucopyga,Oceanites_oceanicus,Odontophorus_gujanensis,Oenanthe_oenanthe,Onychorhynchus_coronatus,Opisthocomus_hoazin,Oreocharis_arfaki,Oreotrochilus_melanogaster,Origma_solitaria,Oriolus_oriolus,Orthonyx_spaldingii,Oxylabes_madagascariensis,Oxyruncus_cristatus,Pachycephala_philippinensis,Pachyramphus_minor,Pandion_haliaetus,Panurus_biarmicus,Paradisaea_raggiana,Pardalotus_punctatus,Parus_major,Passer_domesticus,Passerina_amoena,Patagioenas_fasciata,Pedionomus_torquatus,Pelecanoides_urinatrix,Pelecanus_crispus,Penelope_pileata,Peucedramus_taeniatus,Phaethon_lepturus,Phaetusa_simplex,Phainopepla_nitens,Phalacrocorax_auritus,Phalacrocorax_brasilianus,Phalacrocorax_carbo,Phalacrocorax_harrisi,Phalacrocorax_pelagicus,Phasianus_colchicus,Pheucticus_melanocephalus,Phoenicopterus_ruber,Phylloscopus_trochilus,Piaya_cayana,Picathartes_gymnocephalus,Picoides_pubescens,Piprites_chloris,Pitta_sordida,Ploceus_nigricollis,Pluvianellus_socialis,Podargus_strigoides,Podiceps_cristatus,Podilymbus_podiceps,Poecile_atricapillus,Polioptila_caerulea,Pomatorhinus_ruficollis,Pomatostomus_ruficeps,Probosciger_aterrimus,Promerops_cafer,Prunella_fulvescens,Prunella_himalayana,Pseudopodoces_humilis,Psilopogon_haemacephalus,Psophia_crepitans,Pterocles_burchelli,Pterocles_gutturalis,Pteruthius_melanotis,Ptilonorhynchus_violaceus,Ptilorrhoa_leucosticta,Pycnonotus_jocosus,Pygoscelis_adeliae,Quiscalus_mexicanus,Ramphastos_sulfuratus,Regulus_satrapa,Rhabdornis_inornatus,Rhadina_sibilatrix,Rhagologus_leucostigma,Rhea_americana,Rhea_pennata,Rhegmatorhina_hoffmannsi,Rhinopomastus_cyanomelas,Rhinoptilus_africanus,Rhipidura_dahli,Rhodinocichla_rosea,Rhynochetos_jubatus,Rissa_tridactyla,Rostratula_benghalensis,Rynchops_niger,Sagittarius_serpentarius,Sakesphorus_luctuosus,Sapayoa_aenigma,Saxicola_maurus,Sclerurus_mexicanus,Scopus_umbretta,Scytalopus_superciliaris,Semnornis_frantzii,Serilophus_lunatus,Serinus_canaria,Setophaga_coronata,Setophaga_kirtlandii,Sinosuthora_webbiana,Sitta_europaea,Smithornis_capensis,Spizaetus_tyrannus,Spizella_passerina,Sporophila_hypoxantha,Steatornis_caripensis,Stercorarius_parasiticus,Sterrhoptilus_dennistouni,Strix_occidentalis,Struthidea_cinerea,Struthio_camelus,Sturnus_vulgaris,Sula_dactylatra,Sylvia_atricapilla,Sylvia_borin,Sylvietta_virens,Syrrhaptes_paradoxus,Tachuris_rubrigastra,Taeniopygia_guttata,Tauraco_erythrolophus,Thalassarche_chlororhynchos,Thinocorus_orbignyianus,Thryothorus_ludovicianus,Tichodroma_muraria,Tinamus_guttatus,Todus_mexicanus,Toxostoma_redivivum,Tricholaema_leucomelas,Trogon_melanurus,Turnix_velox,Tympanuchus_cupido,Tyrannus_savana,Tyto_alba,Upupa_epops,Uria_aalge,Uria_lomvia,Urocolius_indicus,Urocynchramus_pylzowi,Vidua_chalybeata,Vidua_macroura,Vireo_altiloquus,Xiphorhynchus_elegans,Zapornia_atra,Zonotrichia_albicollis,Zosterops_hypoxanthus,Zosterops_lateralis,Acinonyx_jubatus,Acomys_cahirinus,Ailuropoda_melanoleuca,Ailurus_fulgens,Allactaga_bullata,Alouatta_palliata,Ammotragus_lervia,Anoura_caudifer,Antilocapra_americana,Aotus_nancymaae,Aplodontia_rufa,Artibeus_jamaicensis,Ateles_geoffroyi,Balaenoptera_acutorostrata,Balaenoptera_bonaerensis,Beatragus_hunteri,Bison_bison,Bos_indicus,Bos_mutus,Bos_taurus,Bubalus_bubalis,Callicebus_donacophilus,Callithrix_jacchus,Camelus_bactrianus,Camelus_dromedarius,Camelus_ferus,Canis_lupus,Canis_lupus_familiaris,Capra_aegagrus,Capra_hircus,Capromys_pilorides,Carlito_syrichta,Carollia_perspicillata,Castor_canadensis,Catagonus_wagneri,Cavia_aperea,Cavia_porcellus,Cavia_tschudii,Cebus_albifrons,Cebus_capucinus,Ceratotherium_simum,Ceratotherium_simum_cottoni,Cercocebus_atys,Cercopithecus_neglectus,Chaetophractus_vellerosus,Cheirogaleus_medius,Chinchilla_lanigera,Chlorocebus_sabaeus,Choloepus_didactylus,Choloepus_hoffmanni,Chrysochloris_asiatica,Colobus_angolensis,Condylura_cristata,Craseonycteris_thonglongyai,Cricetomys_gambianus,Cricetulus_griseus,Crocidura_indochinensis,Cryptoprocta_ferox,Ctenodactylus_gundi,Ctenomys_sociabilis,Cuniculus_paca,Dasyprocta_punctata,Dasypus_novemcinctus,Daubentonia_madagascariensis,Delphinapterus_leucas,Desmodus_rotundus,Dicerorhinus_sumatrensis,Diceros_bicornis,Dinomys_branickii,Dipodomys_ordii,Dipodomys_stephensi,Dolichotis_patagonum,Echinops_telfairi,Eidolon_helvum,Elaphurus_davidianus,Elephantulus_edwardii,Ellobius_lutescens,Ellobius_talpinus,Enhydra_lutris,Eptesicus_fuscus,Equus_asinus,Equus_caballus,Equus_przewalskii,Erinaceus_europaeus,Erythrocebus_patas,Eschrichtius_robustus,Eubalaena_japonica,Eulemur_flavifrons,Eulemur_fulvus,Felis_catus,Felis_nigripes,Fukomys_damarensis,Galeopterus_variegatus,Giraffa_tippelskirchi,Glis_glis,Gorilla_gorilla,Graphiurus_murinus,Helogale_parvula,Hemitragus_hylocrius,Heterocephalus_glaber,Heterohyrax_brucei,Hippopotamus_amphibius,Hipposideros_armiger,Hipposideros_galeritus,Hyaena_hyaena,Hydrochoerus_hydrochaeris,Hystrix_cristata,Ictidomys_tridecemlineatus,Indri_indri,Inia_geoffrensis,Jaculus_jaculus,Kogia_breviceps,Lasiurus_borealis,Lemur_catta,Leptonychotes_weddellii,Lepus_americanus,Lipotes_vexillifer,Loxodonta_africana,Lycaon_pictus,Macaca_fascicularis,Macaca_mulatta,Macaca_nemestrina,Macroglossus_sobrinus,Mandrillus_leucophaeus,Manis_javanica,Manis_pentadactyla,Marmota_marmota,Megaderma_lyra,Mellivora_capensis,Meriones_unguiculatus,Mesocricetus_auratus,Mesoplodon_bidens,Microcebus_murinus,Microgale_talazaci,Micronycteris_hirsuta,Microtus_ochrogaster,Miniopterus_natalensis,Miniopterus_schreibersii,Mirounga_angustirostris,Mirza_coquereli,Monodon_monoceros,Mormoops_blainvillei,Moschus_moschiferus,Mungos_mungo,Murina_feae,Mus_caroli,Mus_musculus,Mus_pahari,Mus_spretus,Muscardinus_avellanarius,Mustela_putorius,Myocastor_coypus,Myotis_brandtii,Myotis_davidii,Myotis_lucifugus,Myotis_myotis,Myrmecophaga_tridactyla,Nannospalax_galili,Nasalis_larvatus,Neomonachus_schauinslandi,Neophocaena_asiaeorientalis,Noctilio_leporinus,Nomascus_leucogenys,Nycticebus_coucang,Ochotona_princeps,Octodon_degus,Odobenus_rosmarus,Odocoileus_virginianus,Okapia_johnstoni,Ondatra_zibethicus,Onychomys_torridus,Orcinus_orca,Orycteropus_afer,Oryctolagus_cuniculus,Otolemur_garnettii,Ovis_aries,Ovis_canadensis,Pan_paniscus,Pan_troglodytes,Panthera_onca,Panthera_pardus,Panthera_tigris,Pantholops_hodgsonii,Papio_anubis,Paradoxurus_hermaphroditus,Perognathus_longimembris,Peromyscus_maniculatus,Petromus_typicus,Phocoena_phocoena,Piliocolobus_tephrosceles,Pipistrellus_pipistrellus,Pithecia_pithecia,Platanista_gangetica,Pongo_abelii,Procavia_capensis,Propithecus_coquereli,Psammomys_obesus,Pteronotus_parnellii,Pteronura_brasiliensis,Pteropus_alecto,Pteropus_vampyrus,Puma_concolor,Pygathrix_nemaeus,Rangifer_tarandus,Rattus_norvegicus,Rhinolophus_sinicus,Rhinopithecus_bieti,Rhinopithecus_roxellana,Rousettus_aegyptiacus,Saguinus_imperator,Saiga_tatarica,Saimiri_boliviensis,Scalopus_aquaticus,Semnopithecus_entellus,Sigmodon_hispidus,Solenodon_paradoxus,Sorex_araneus,Spermophilus_dauricus,Spilogale_gracilis,Suricata_suricatta,Sus_scrofa,Tadarida_brasiliensis,Tamandua_tetradactyla,Tapirus_indicus,Tapirus_terrestris,Thryonomys_swinderianus,Tolypeutes_matacus,Tonatia_saurophila,Tragulus_javanicus,Trichechus_manatus,Tupaia_chinensis,Tupaia_tana,Tursiops_truncatus,Uropsilus_gracilis,Ursus_maritimus,Vicugna_pacos,Vulpes_lagopus,Xerus_inauris,Zalophus_californianus,Zapus_hudsonius,Ziphius_cavirostris, https://cgl.gi.ucsc.edu/data/cactus/605-vertebrate-2020-hub/documentation/600wayHubDescription.html
https://cotneylab.cam.uchc.edu/~jcotney/CRANIOFACIAL_HUB/Craniofacial_Data_Hub.txt Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health 2017-04-27 09:23:33 3 hg19,mm9,hg38, http://cotney.research.uchc.edu
https://danio-code.zfin.org/trackhub/DANIO-CODE.hub.txt DANIO-CODE Track Hub DANIO-CODE: Central repository for zebrafish genomic datasets 2020-06-03 10:51:46 2 danRer10,danRer11, https://danio-code.zfin.org/trackhubDescription/
https://dashr2.lisanwanglab.org/tracks/DASHR2_hub.txt DASHR v2.0 Hub DASHR v2.0 Human small non-coding RNA data hub 2018-12-05 11:09:59 2 hg19,hg38, http://lisanwanglab.org/DASHRv2/
https://data.broadinstitute.org/compbio1/PhyloCSFtracks/trackHub/hub.txt PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF 2015-01-06 13:50:19 9 hg19,hg38,mm10,mm39,galGal4,galGal6,dm6,ce11,wuhCor1, https://data.broadinstitute.org/compbio1/PhyloCSFtracks/trackHub/hub.DOC.html
https://data.broadinstitute.org/compbio1/SynonymousConstraintTracks/trackHub/hub.txt Synonymous Constraint Synonymous Constraint Elements and Synonymous Acceleration Elements in protein-coding regions 2020-02-07 11:48:59 3 hg19,hg38,wuhCor1, https://data.broadinstitute.org/compbio1/SynonymousConstraintTracks/trackHub/SynonymousConstraint.html
https://data.broadinstitute.org/vgb/dog/dog/hub.txt Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 2017-05-16 10:54:10 1 canFam3, http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0091172
https://data.cyverse.org/dav-anon/iplant/home/juanlmateo/CISSTEM/hub.txt Seq-data on mm9 NS5 cells Set of sequencing data on mm9 NS5 cells 2017-11-28 08:32:43 1 mm9, http://genome.cshlp.org/content/25/1/41.full
https://data.cyverse.org/dav-anon/iplant/home/samksmith/steguina_track-hub/steguina/hub.txt singing mouse genome hub This is the genome hub for Alston's singing mouse (Scotinomys teguina). 2022-02-14 10:41:42 1 steguina, https://data.cyverse.org/dav-anon/iplant/home/samksmith/steguina_track-hub/steguina/aboutHub.html
https://downloads.wormbase.org/releases/current-production-release/MULTI_SPECIES/hub/hub.txt WormBase WormBase nematode genomes 2017-02-10 11:57:55 12 brenneri,japonica,remanei,ovolvulus,briggsae,brugia,brugia3,c_nigoni,pristionchus,t_muris,elegans,s_ratti, https://downloads.wormbase.org/releases/current-production-release/MULTI_SPECIES/hub/documentation/hub.html
https://epd.expasy.org/epd/ucsc/epdHub/epdHub.txt EPD Viewer Hub Promoter specific experimental data and TSS annotation from the EPD database 2017-01-23 13:00:37 18 hg19,hg38,mm9,mm10,danRer7,rheMac8,galGal5,rn6,canFam3,dm6,amel5,ce6,sacCer3,spo2,pfa2,araTha1,zm3,dpu2, https://epd.expasy.org/epd/
https://ftp.ncbi.nlm.nih.gov/pub/dbVar/sandbox/dbvarhub/hub.txt dbVar Hub NCBI's database of human genomic Structural Variation -- large variants >50 bp 2020-03-30 09:06:34 2 hg19,hg38, https://ftp.ncbi.nlm.nih.gov/pub/dbVar/sandbox/dbvarhub/dbVar.html
https://ftp.ncbi.nlm.nih.gov/refseq/FunctionalElements/trackhub/hub.txt RefSeqFE Hub NCBI RefSeq Functional Elements interactions and features 2020-08-07 17:14:22 6 GCA_009914755.4,hg19,hg38,hs1,mm10,mm39, https://ftp.ncbi.nlm.nih.gov/refseq/FunctionalElements/trackhub/RefSeqFE_Hub.html
https://ftp.ncbi.nlm.nih.gov/snp/population_frequency/TrackHub/20200227123210/hub.txt ALFA Hub NCBI's Allele Frequency Aggregator (ALFA) allele frequency for variants in dbGaP studies. 2020-09-02 16:46:09 2 hg19,hg38, https://ftp.ncbi.nlm.nih.gov/snp/population_frequency/TrackHub/20200227123210/ALFA.html
https://genome-test.gi.ucsc.edu/hubs/globalReference/hub.txt Human Global Reference Genomes Human Global Reference Genome assembly hub 2020-01-20 15:42:49 10 GCA_003601015.1_HG03807_prelim_1.0,GCA_003574075.1_HG02818_prelim_1.0,GCA_003086635.1_HG03486_prelim_1.0,GCA_003070785.1_HG02059_prelim_1.0,GCA_002872155.1_NA19434_prelim_1.0,GCA_002209525.2_HG01352_prelim_2.1,GCA_002208065.1_HG00733_prelim_1.0,GCA_002180035.3_HG00514_prelim_3.0,GCA_002077035.3_NA12878_prelim_3.0,GCA_001524155.4_NA19240_prelim_3.0, https://genome-test.gi.ucsc.edu/hubs/globalReference/index.html
https://genome-test.gi.ucsc.edu/~max/immuno/track/hub/hub.txt Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB 2016-01-10 18:42:09 1 hg19, https://genome-test.gi.ucsc.edu/~max/immuno/track/hub/desc.html
https://hgdownload.soe.ucsc.edu/hubs/CCGP/hub.txt CCGP The California Conservation Genomics Project (CCGP) assemblies 2023-05-03 14:40:15 126 GCA_026170555.1,GCA_026170545.1,GCA_024610745.1,GCA_024610735.1,GCA_022747625.1,GCA_022747635.1,GCA_025532165.1,GCA_026230005.1,GCA_026230025.1,GCA_028538565.1,GCA_028534965.1,GCA_019985065.2,GCA_019985075.1,GCA_022045225.1,GCA_022045235.1,GCA_028534865.1,GCA_028534895.1,GCA_022578405.1,GCA_022577435.1,GCA_026167975.1,GCA_026167985.1,GCA_022079275.1,GCF_022079265.1,GCA_024803775.1,GCA_024803745.1,GCA_022605925.1,GCA_022605575.1,GCA_023349545.1,GCA_023349395.1,GCA_022578425.1,GCA_022577455.1,GCF_021869535.1,GCA_021869935.1,GCA_023055725.1,GCA_023055505.1,GCA_028535905.1,GCA_028535815.1,GCA_022749735.1,GCA_022749685.1,GCA_028537955.1,GCA_028537755.1,GCA_029215685.1,GCA_029215655.1,GCA_023055485.1,GCA_023055345.1,GCA_028535165.1,GCA_028535515.1,GCA_024363435.1,GCA_024363575.1,GCA_024610695.1,GCA_024610705.1,GCA_024711535.1,GCA_024711525.1,GCA_023349535.1,GCA_023349555.1,GCA_026229955.1,GCA_026167925.1,GCA_029215635.1,GCA_029215605.1,GCA_023362785.1,GCA_023362775.1,GCA_022086895.1,GCA_022086475.1,GCA_028749965.1,GCA_028749985.1,GCA_023055495.1,GCF_023055435.1,GCA_023053685.1,GCA_021966175.1,GCA_021963965.1,GCA_029215795.1,GCA_029215775.1,GCA_023333555.1,GCA_023333525.1,GCA_023053675.1,GCA_023053635.1,GCA_023053665.1,GCA_023055565.1,GCA_023055425.1,GCA_022578375.1,GCA_022577445.1,GCA_022749775.1,GCA_022749695.1,GCA_024509165.1,GCA_024509115.1,GCA_023634275.1,GCA_023634205.1,GCA_023349385.1,GCA_023349425.1,GCA_023634265.1,GCA_023634235.1,GCA_026168045.1,GCA_026167965.1,GCA_026437355.1,GCA_026437365.1,GCA_026230055.1,GCA_026230045.1,GCA_024363235.1,GCA_024362995.1,GCA_023055385.1,GCA_023055355.1,GCA_029207655.1,GCA_029207665.1,GCA_023053535.1,GCA_023053565.1,GCA_023053555.1,GCA_023053575.1,GCA_023053545.1,GCA_022605895.1,GCA_022605955.1,GCA_023333635.1,GCA_023333645.1,GCA_026170595.1,GCA_026170395.1,GCA_028536645.1,GCA_028536675.1,GCA_029215705.1,GCA_029215755.1,GCA_023055415.1,GCA_023055335.1,GCA_029207785.1,GCA_029207755.1,GCA_024372515.1,GCA_024362935.1,GCA_028536395.1,GCA_028538775.1, https://hgdownload.soe.ucsc.edu/hubs/CCGP/index.html
https://hgdownload.soe.ucsc.edu/hubs/HPRC/hub.txt HPRC The Human Pangenome Reference Consortium 2023-05-03 15:15:54 96 GCA_018471515.1,GCA_018472595.1,GCA_018472605.1,GCA_018472575.1,GCA_018472565.1,GCA_018472585.1,GCA_018506975.1,GCA_018506955.1,GCA_018472765.1,GCA_018472715.1,GCA_018471095.1,GCA_018471105.1,GCA_018472685.1,GCA_018472725.1,GCA_018471345.1,GCA_018471075.1,GCA_018504365.1,GCA_018504645.1,GCA_018469665.1,GCA_018469695.1,GCA_018471085.1,GCA_018471065.1,GCA_018504375.1,GCA_018504045.1,GCA_018469405.1,GCA_018469675.1,GCA_018469865.1,GCA_018469965.1,GCA_018469685.1,GCA_018469705.1,GCA_018467155.1,GCA_018467165.1,GCA_018472695.1,GCA_018472705.1,GCA_018471545.1,GCA_018471555.1,GCA_018472865.1,GCA_018472845.1,GCA_018506125.1,GCA_018505855.1,GCA_018504085.1,GCA_018504055.1,GCA_018505825.1,GCA_018505865.1,GCA_018852585.1,GCA_018852595.1,GCA_018471535.1,GCA_018471525.1,GCA_018466845.1,GCA_018466835.1,GCA_018467015.1,GCA_018467005.1,GCA_018466985.1,GCA_018466855.1,GCA_018470445.1,GCA_018470435.1,GCA_018469875.1,GCA_018469925.1,GCA_018469955.1,GCA_018469945.1,GCA_018469935.1,GCA_018470425.1,GCA_018504065.1,GCA_018504075.1,GCA_018503585.1,GCA_018503575.1,GCA_018470455.1,GCA_018470465.1,GCA_018506165.1,GCA_018506155.1,GCA_018472855.1,GCA_018473305.1,GCA_018503525.1,GCA_018503245.1,GCA_018505845.1,GCA_018505835.1,GCA_018469425.1,GCA_018469415.1,GCA_018473295.1,GCA_018473315.1,GCA_018472825.1,GCA_018472835.1,GCA_018503255.1,GCA_018503285.1,GCA_018503275.1,GCA_018503265.1,GCA_018504635.1,GCA_018504625.1,GCA_018504655.1,GCA_018504665.1,GCA_021951015.1,GCA_021950905.1,GCA_018852615.1,GCA_018852605.1,GCA_018506965.1,GCA_018506945.1, https://hgdownload.soe.ucsc.edu/hubs/HPRC/index.html
https://hgdownload.soe.ucsc.edu/hubs/RepeatBrowser2020/hub.txt UCSC Repeat Browser 2020 Update Human Repeat consensuses annotated with lifted tracks 2020-03-18 11:59:31 3 hg38reps,hg19,hg38, http://repeatbrowser.ucsc.edu
https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt VGP primary Vertebrate Genomes Project primary assemblies 2019-08-06 09:56:34 207 GCA_009769605.1,GCF_027172205.1,GCA_009819775.1,GCF_018492685.1,GCA_003957555.2,GCA_946808225.1,GCF_900964775.1,GCF_024166365.1,GCF_902167405.1,GCF_009819705.1,GCA_905171665.2,GCF_015852505.1,GCF_017976425.1,GCA_936440315.1,GCA_015227805.3,GCA_028501385.1,GCF_028500815.1,GCA_020826845.1,GCA_028021495.1,GCA_028022725.1,GCA_009819655.1,GCA_025265405.1,GCF_009873245.2,GCA_900634775.2,GCF_017639745.1,GCA_933228915.1,GCF_905147365.1,GCF_020382885.2,GCF_009762305.2,GCF_007474595.2,GCA_009819595.1,GCF_900634415.1,GCA_027408225.1,GCA_027557775.1,GCF_027409825.1,GCA_900324465.3,GCF_011100635.1,GCF_017976375.1,GCA_027559615.1,GCA_903992545.1,GCF_020740795.1,GCA_009819605.1,GCF_905171765.1,GCA_009764595.1,GCA_020510985.1,GCF_017976325.1,GCA_020745685.1,GCF_021462225.1,GCA_900700375.2,GCF_027887155.1,GCF_014839835.1,GCA_011004875.1,GCA_900246225.5,GCF_014176215.1,GCF_013358815.1,GCA_016128335.2,GCA_020745735.1,GCF_009829155.1,GCA_922990625.1,GCA_907165065.1,GCA_902686455.1,GCF_902655055.1,GCF_903992535.2,GCF_905171775.1,GCF_013347855.1,GCA_017639485.1,GCF_947347685.1,GCA_903797595.2,GCF_027595985.1,GCF_902459465.1,GCA_901699155.2,GCF_947179515.1,GCF_027579735.1,GCF_007364275.1,GCA_014839995.1,GCF_902459505.1,GCA_014839755.1,GCA_900880675.2,GCF_900496995.4,GCF_903995435.1,GCF_007399415.2,GCF_902686445.1,GCA_905319855.2,GCA_013368605.1,GCF_902652985.1,GCF_017639515.1,GCF_004115265.2,GCA_014108255.1,GCF_901709675.1,GCF_014108235.1,GCF_015237465.2,GCF_015220075.1,GCF_026419915.1,GCF_020740725.1,GCF_015220745.1,GCA_027477595.1,GCA_016695395.2,GCA_027474245.1,GCA_003369685.2,GCF_003369695.1,GCA_900634625.2,GCF_013368585.1,GCF_902148845.1,GCA_027574665.1,GCF_004027225.2,GCF_937001465.1,GCF_009829125.3,GCF_014108245.1,GCA_028022735.1,GCF_009829145.1,GCA_023638135.1,GCA_014839685.1,GCA_024294585.1,GCF_009764565.3,GCF_020740685.1,GCF_017639655.2,GCA_028389875.1,GCA_027579695.1,GCA_900963305.2,GCA_023637945.1,GCA_910589615.1,GCF_009769545.1,GCA_017639555.1,GCF_015476345.1,GCA_947247035.1,GCF_025201925.1,GCA_025201965.1,GCF_902362185.1,GCF_019393635.1,GCF_009769625.2,GCA_027579445.1,GCF_009650955.1,GCF_009762535.1,GCA_929443795.2,GCF_011004845.1,GCF_015227675.2,GCF_902148855.1,GCF_004126475.2,GCF_014108415.1,GCA_027942865.1,GCA_027942885.1,GCA_017639675.1,GCA_023634155.1,GCF_902150065.1,GCF_027358695.1,GCF_004115215.2,GCA_020745775.1,GCF_902500255.1,GCA_026419965.1,GCA_026419985.1,GCA_008658365.1,GCF_020740605.2,GCF_910594005.1,GCF_015220715.1,GCA_009769465.1,GCA_015220805.1,GCA_009819825.1,GCF_900747795.2,GCA_016904835.1,GCA_901001165.2,GCA_910591455.2,GCF_023343835.1,GCA_023634085.1,GCA_027887145.1,GCF_009819535.1,GCF_010993605.1,GCF_900634795.3,GCF_027406575.1,GCF_009764475.1,GCA_020800305.1,GCF_910596095.1,GCF_903995425.1,GCA_023851605.1,GCF_015220235.1,GCF_905163445.1,GCA_026979565.1,GCA_026979555.1,GCA_902713435.2,GCA_947034865.1,GCF_027358585.1,GCA_020746105.1,GCF_009819885.2,GCA_028018845.1,GCA_028020825.1,GCF_010909765.2,GCF_901765095.1,GCA_901000725.3,GCF_009819795.1,GCF_901001135.1,GCF_008692025.1,GCF_026979565.1,GCA_013358685.1,GCF_904848185.1,GCF_009769535.1,GCA_020745705.1,GCF_016700215.2,GCA_947461875.1,GCF_024139225.1,GCF_011100555.1,GCF_028858705.1,GCA_009769525.1,GCF_914725855.1,GCF_003957565.2,GCA_903684865.1,GCA_903684855.2,GCA_944039275.1,GCA_900324485.3, https://hgdownload.soe.ucsc.edu/hubs/VGP/index.html
https://hgdownload.soe.ucsc.edu/hubs/birds/hub.txt Bird assemblies Bird genome assemblies 2020-05-18 16:48:04 270 GCA_009769605.1,GCA_009769595.1,GCA_026170555.1,GCA_026170545.1,GCF_000699105.1,GCF_000698965.1,GCF_000691975.1,GCA_009819775.1,GCA_009819805.1,GCA_003957575.1,GCF_003957555.1,GCF_000737465.1,GCF_000703405.1,GCF_018691265.1,GCA_015227815.3,GCA_015227805.3,GCF_005870125.1,GCF_028500815.1,GCA_028501385.1,GCA_009819655.1,GCA_009819715.1,GCF_013377495.2,GCA_019023105.1,GCF_002901205.1,GCF_001604755.1,GCA_017639355.1,GCA_001420675.1,GCA_019593555.1,GCF_012460135.2,GCF_001039765.1,GCF_000695765.1,GCF_000238935.1,GCA_012275265.1,GCF_012275295.1,GCA_012275275.1,GCF_003259725.1,GCA_022605925.1,GCA_022605575.1,GCF_018139145.2,GCA_023055725.1,GCA_023055505.1,GCF_028551555.1,GCA_006130075.1,GCA_009819585.1,GCA_009819595.1,GCF_000002315.6,GCA_027408205.1,GCA_027408225.1,GCA_024206055.2,GCA_027408255.1,GCA_027557775.1,GCF_016700215.2,GCF_016699485.2,GCF_003342845.1,GCF_000747805.2,GCF_000700745.2,GCF_000247815.1,GCF_007115625.1,GCF_022539315.1,GCA_017976305.1,GCF_017976375.1,GCA_027559525.1,GCA_027559615.1,GCF_001447265.1,GCA_020740585.1,GCF_020740795.1,GCA_009819645.1,GCA_009819605.1,GCA_009764545.1,GCA_009764595.1,GCF_000708225.1,GCF_000691785.1,GCF_000687375.1,GCA_014839825.1,GCF_014839835.1,GCF_000709895.1,GCA_011004865.1,GCA_011004875.1,GCF_000699145.1,GCA_016128335.2,GCF_003342905.1,GCA_907165095.1,GCA_907165065.1,GCF_014805655.1,GCA_017639475.1,GCA_017639485.1,GCA_903797565.2,GCA_903797595.2,GCA_901699165.2,GCA_901699155.2,GCA_014839765.1,GCA_014839755.1,GCF_001715985.3,GCA_902153765.2,GCF_900496995.4,GCA_003413605.1,GCF_000708925.1,GCA_013368595.1,GCA_013368605.1,GCF_001522545.3,GCF_027791375.1,GCA_001870855.1,GCA_003343005.1,GCF_019232065.1,GCA_016647715.1,GCA_009867235.1,GCA_015220155.1,GCF_015220075.1,GCA_026419925.1,GCF_026419915.1,GCA_020740675.1,GCF_020740725.1,GCF_002078875.1,GCF_000692075.1,GCF_000738735.5,GCA_027406555.1,GCA_027477595.1,GCA_027474345.1,GCA_027474245.1,GCA_009936445.2,GCA_013407035.1,GCF_001577835.2,GCA_027595965.1,GCA_027574665.1,GCA_004011185.1,GCF_004027225.2,GCF_000696875.1,GCF_000708025.1,GCA_028017155.1,GCA_028022735.1,GCF_009829145.1,GCA_009829205.1,GCA_023634305.1,GCA_023638135.1,GCA_017639645.1,GCF_017639655.2,GCF_026119805.1,GCA_028389885.1,GCA_028389875.1,GCA_003342835.1,GCF_000687185.1,GCA_023637925.1,GCA_023637945.1,GCF_000695195.1,GCA_017639665.1,GCA_017639555.1,GCA_008746955.1,GCF_003850225.1,GCF_015476345.1,GCF_017639235.1,GCF_000277835.1,GCA_017639245.1,GCA_009769485.2,GCF_009769625.2,GCA_027579665.1,GCA_027579445.1,GCF_009650955.1,GCA_009651025.1,GCA_008692595.2,GCF_000690835.1,GCA_929447715.1,GCA_929443795.2,GCF_929443795.1,GCA_014706295.1,GCF_003343035.1,GCA_023634185.1,GCF_023634155.1,GCF_000337955.1,GCF_024509145.1,GCA_020745805.1,GCA_020745775.1,GCA_000332375.2,GCA_008658365.1,GCA_008658355.1,GCA_009769465.1,GCA_009764505.1,GCA_015220175.1,GCA_015220805.1,GCA_019345075.1,GCA_009819825.1,GCA_009819485.1,GCF_000690875.1,GCF_020745825.1,GCF_000710305.1,GCA_016880875.1,GCA_016904835.1,GCF_004143745.1,GCF_000337935.1,GCA_023344045.1,GCF_023343835.1,GCF_011077185.1,GCF_001431845.1,GCF_017590135.1,GCF_022539395.1,GCF_003984885.1,GCA_021966175.1,GCA_021963965.1,GCA_023634115.1,GCF_023634085.1,GCF_000337975.1,GCA_027887135.1,GCA_027887145.1,GCA_022578375.1,GCA_022577445.1,GCF_901933205.1,GCA_902806625.1,GCA_022749775.1,GCA_022749695.1,GCA_020801775.1,GCA_020800305.1,GCF_000690715.1,GCA_026979555.1,GCA_026979565.1,GCA_026168045.1,GCA_026167965.1,GCA_902168055.1,GCF_000690775.1,GCA_020746095.1,GCA_020746105.1,GCA_009819505.2,GCF_009819885.2,GCA_028019105.1,GCA_028018845.1,GCF_002166845.1,GCA_013030995.1,GCF_000971095.1,GCA_028020675.1,GCA_028020825.1,GCF_000331425.1,GCA_023055385.1,GCA_023055355.1,GCA_009819845.1,GCF_009819795.1,GCF_000146605.3,GCA_905368555.1,GCF_026979565.1,GCA_022605895.1,GCA_022605955.1,GCA_028536645.1,GCA_028536675.1,GCA_020745695.1,GCA_020745705.1,GCF_015832195.1,GCF_025592945.1,GCF_003945725.1,GCF_017590055.1,GCF_000691405.1,GCA_947461875.1,GCA_947461935.1,GCF_019238085.1,GCF_000687285.1,GCF_000385455.1,GCF_000705375.1,GCF_028858705.1,GCF_003031625.1,GCF_003945595.2,GCA_029207785.1,GCA_029207755.1,GCA_024372515.1,GCA_024362935.1,GCA_009769525.1,GCA_009769505.1,GCA_003957525.2,GCF_003957565.2,GCA_009859065.2,GCA_003957525.1,GCA_009859025.1,GCA_008822115.3,GCA_008822125.1,GCF_008822105.2, https://hgdownload.soe.ucsc.edu/hubs/birds/index.html
https://hgdownload.soe.ucsc.edu/hubs/fish/hub.txt Fish assemblies Fish genome assemblies 2020-05-18 16:48:31 271 GCF_017589495.1,GCF_000485575.1,GCA_018492705.1,GCF_018492685.1,GCF_001266775.1,GCF_002910315.2,GCA_946807865.1,GCA_946808225.1,GCF_013103735.1,GCA_026230005.1,GCA_026230025.1,GCF_900964775.1,GCA_900964985.2,GCF_902167405.1,GCA_902167395.1,GCF_009819705.1,GCA_009819745.1,GCF_900700415.2,GCA_905171655.2,GCA_905171665.2,GCF_905237065.1,GCF_000233375.1,GCF_013347765.1,GCF_900080235.1,GCA_017976295.1,GCF_017976425.1,GCA_936446605.1,GCA_936440315.1,GCF_001640805.2,GCF_000690725.1,GCA_022578405.1,GCA_022577435.1,GCF_000735185.1,GCA_028021495.1,GCA_028022725.1,GCF_027474105.1,GCF_023375685.1,GCF_005870065.1,GCF_013358895.1,GCA_900634775.2,GCA_900650505.1,GCA_017639755.1,GCF_017639745.1,GCA_933228925.1,GCA_933228915.1,GCF_029448725.1,GCF_011397635.1,GCF_000239415.1,GCF_018398535.1,GCA_020382915.1,GCF_020382885.2,GCA_022749735.1,GCA_022749685.1,GCF_001660625.3,GCF_900634415.1,GCA_900634435.1,GCF_900408965.1,GCF_014805685.1,GCF_019703515.2,GCF_018296145.1,GCF_002872995.1,GCA_027409835.1,GCF_027409825.1,GCF_012931545.1,GCF_023373465.1,GCA_900324465.3,GCA_900650485.1,GCF_002776465.1,GCF_022539595.1,GCF_002021735.2,GCF_018340385.1,GCA_020510965.1,GCA_020510985.1,GCA_017976315.1,GCF_017976325.1,GCA_020745675.1,GCA_020745685.1,GCA_007224835.1,GCA_903798025.1,GCF_021462225.1,GCF_021917145.1,GCA_900700375.2,GCA_900700345.2,GCF_025434085.1,GCA_900246225.5,GCA_013347915.1,GCF_013358815.1,GCF_003665695.1,GCF_023856365.1,GCF_902827165.1,GCF_010015445.1,GCA_947347695.1,GCF_947347685.1,GCF_905237075.1,GCF_016745375.1,GCF_022458985.1,GCF_007364275.1,GCA_007364235.1,GCA_014839645.1,GCA_014839995.1,GCF_005281545.1,GCA_900880675.2,GCA_900880695.1,GCF_001515645.1,GCF_003368295.1,GCF_019924925.1,GCF_026225935.1,GCF_000788275.1,GCF_002260705.1,GCF_901709675.1,GCA_901709685.1,GCF_003331165.1,GCF_024217435.1,GCA_024217435.4,GCF_000633615.1,GCA_015220095.1,GCF_015220745.1,GCF_001515625.1,GCF_018320785.1,GCF_002922805.2,GCA_900634625.2,GCA_900651595.1,GCF_013368585.1,GCF_001970005.1,GCF_002234675.1,GCF_902148845.1,GCA_902148835.1,GCF_006386435.1,GCF_016432855.1,GCF_018398675.1,GCF_020615455.1,GCF_000972845.2,GCF_014851395.1,GCA_014839705.1,GCA_014839685.1,GCF_008729295.1,GCA_027579805.1,GCA_027579695.1,GCA_900963305.2,GCA_900963505.1,GCA_910589325.1,GCA_910589615.1,GCF_009769545.1,GCA_009769515.1,GCF_000239395.1,GCF_020085105.1,GCF_027744825.2,GCF_001649575.2,GCF_000372685.2,GCA_019721115.1,GCF_023375975.1,GCF_902362185.1,GCA_902362175.1,GCA_023349535.1,GCA_023349555.1,GCF_001444195.1,GCF_009829125.3,GCA_009829135.1,GCF_000826765.1,GCF_011125445.2,GCA_009762535.1,GCA_009762545.1,GCF_001858045.2,GCF_902500615.1,GCF_024256425.1,GCF_004634155.1,GCA_011004835.1,GCF_011004845.1,GCF_002872115.1,GCF_008692095.1,GCF_902148855.1,GCA_902148825.1,GCF_027580225.1,GCF_000239375.1,GCF_013339905.1,GCF_022539355.2,GCA_027942865.1,GCA_027942885.1,GCA_017639685.1,GCA_017639675.1,GCF_008315115.2,GCF_902150065.1,GCA_902148815.1,GCF_021184085.1,GCF_902827175.1,GCF_902500255.1,GCA_902500245.1,GCF_002163495.1,GCF_013265735.2,GCF_025860055.1,GCA_014183145.1,GCA_015220065.1,GCF_015220715.1,GCF_001682695.1,GCF_900747795.2,GCA_900700845.2,GCF_027744805.1,GCF_014905685.2,GCA_901001165.2,GCA_910591705.2,GCA_910591455.2,GCF_022985175.1,GCF_001443285.1,GCF_019176455.1,GCF_000732505.1,GCF_001443325.1,GCF_900634795.4,GCA_900651605.1,GCF_023724105.1,GCF_021292245.1,GCF_006149115.2,GCF_902827115.1,GCF_002775205.1,GCA_910596085.1,GCF_910596095.1,GCF_001515605.1,GCF_002109545.1,GCF_021347895.1,GCF_027596085.1,GCA_902713425.1,GCA_902713435.1,GCA_947034905.1,GCA_947034865.1,GCA_027382375.1,GCF_027358585.1,GCF_003671635.1,GCF_004916995.1,GCF_009078355.1,GCF_018831695.1,GCF_001952655.1,GCF_016859285.1,GCF_904425465.1,GCF_016920845.1,GCA_026437355.1,GCA_026437365.1,GCF_001891065.2,GCF_000523025.1,GCF_901000725.2,GCA_901000725.3,GCA_901000745.3,GCF_022379125.1,GCF_001465895.1,GCF_027789165.1,GCA_013621035.1,GCA_013347815.1,GCA_013358685.1,GCF_019740435.1,GCF_016077235.1,GCF_004355925.1,GCA_023055335.1,GCA_023055415.1,GCF_018812025.1,GCF_022655615.1,GCF_003724035.1,GCF_004354835.1,GCA_904848175.1,GCF_904848185.1,GCA_914744365.1,GCF_914725855.1,GCF_002814215.2,GCF_009762535.1,GCF_000238955.4,GCA_018400075.1,GCA_903684865.1,GCA_903684855.2,GCA_944039255.1,GCA_944039275.1,GCF_000002035.6,GCA_900700395.1,GCF_900324485.2,GCA_900324485.3, https://hgdownload.soe.ucsc.edu/hubs/fish/index.html
https://hgdownload.soe.ucsc.edu/hubs/fungi/hub.txt Fungi assemblies Fungi genome assemblies 2021-03-02 11:55:22 544 GCF_003184765.1,GCF_001890905.1,GCF_023601865.1,GCF_009176365.1,GCF_001642055.1,GCF_004154835.1,GCF_024043155.1,GCF_010015735.1,GCF_907166805.1,GCF_001792695.1,GCF_003184695.1,GCF_013036055.1,GCF_009193585.1,GCF_002847485.1,GCF_002847045.1,GCA_001990825.1,GCF_016861735.1,GCF_000002715.2,GCF_024043145.1,GCF_003184835.1,GCF_023757985.1,GCF_003184535.1,GCF_003184825.1,GCF_000149645.3,GCF_014117465.1,GCF_000002655.1,GCF_001890805.1,GCF_003184545.1,GCF_003184865.1,GCF_023758085.1,GCF_003184845.1,GCF_024043165.1,GCF_024043175.1,GCF_003184785.1,GCF_010724455.1,GCF_016861625.1,GCF_022496945.1,GCF_000721775.1,GCF_016097325.1,GCF_023757995.1,GCF_003369625.1,GCF_000721765.1,GCF_003184625.1,GCF_000011425.1,GCF_000149205.2,GCF_003184595.1,GCF_000002855.3,GCF_001204775.2,GCF_023758075.1,GCF_002847465.1,GCF_002846915.1,GCF_000225545.1,GCA_000269785.2,GCF_000184455.2,GCF_003184755.1,GCF_024291825.1,GCF_010093885.1,GCF_009193645.1,GCF_009193445.1,GCF_018340605.1,GCF_000721785.1,GCF_016861865.1,GCF_004011695.1,GCF_020736505.1,GCF_000600275.1,GCF_003184585.1,GCF_003184525.1,GCF_002849105.1,GCF_000721755.1,GCF_001890705.1,GCF_003426965.1,GCF_000149615.1,GCF_002237265.1,GCF_023758025.1,GCF_022578515.1,GCF_013340325.1,GCF_001078395.1,GCF_011692745.1,GCF_003184745.1,GCF_003184925.1,GCF_023758065.1,GCF_001890125.1,GCF_023758015.1,GCF_018404265.1,GCF_003344945.1,GCF_001890725.1,GCF_000280675.1,GCF_014898295.1,GCF_000143535.2,GCA_000166155.1,GCF_000003525.1,GCF_014898535.1,GCF_020726555.1,GCF_013461495.1,GCF_019456465.1,GCF_000003855.2,GCF_000523455.1,GCF_000338955.1,GCF_014898465.1,GCF_014898435.1,GCA_000003855.2,GCF_000338995.1,GCF_004022145.1,GCF_000527765.1,GCF_000523435.1,GCF_013390185.1,GCF_000281105.1,GCF_000835475.1,GCF_010015615.1,GCF_002742065.1,GCF_000365165.1,GCF_026319265.1,GCF_000585585.1,GCF_000585565.1,GCF_000365145.1,GCF_026319165.1,GCF_009771025.1,GCF_001636725.1,GCF_000143365.1,GCF_011800055.1,GCF_000149035.1,GCF_001672515.1,GCF_000149335.2,GCF_000835495.1,GCF_011947395.1,GCF_019650295.1,GCF_023278565.1,GCF_000225605.1,GCF_001831195.1,GCF_000151335.2,GCF_000585535.1,GCF_011075155.1,GCF_013390195.1,GCA_000170175.2,GCF_022836535.1,GCF_000221225.1,GCF_014235925.1,GCF_000585515.1,GCF_010015565.1,GCF_026229845.1,GCF_019321695.1,GCF_022478825.1,GCF_008694065.1,GCF_014595645.1,GCF_001625195.1,GCF_001883845.1,GCF_022478715.1,GCF_010094145.1,GCF_022478755.1,GCF_024521655.1,GCF_010015815.1,GCF_022497035.1,GCF_000709125.1,GCF_019669845.1,GCF_010015585.1,GCF_022114955.1,GCF_000230625.1,GCF_000836275.1,GCF_000835515.1,GCF_000464535.1,GCF_000836115.1,GCF_000835505.1,GCF_003316985.1,GCF_001651985.1,GCF_020744385.1,GCF_026873545.1,GCF_900079805.1,GCF_020509005.1,GCA_900044135.1,GCF_000240135.3,GCF_025433545.1,GCF_900044065.1,GCF_001642475.1,GCF_000836435.1,GCF_019915245.1,GCF_001646965.1,GCF_000260195.1,GCF_000149955.1,GCF_013085055.1,GCF_000271745.1,GCF_000835455.1,GCF_019609905.1,GCF_900067095.1,GCF_000303195.2,GCF_020744475.1,GCF_020744495.1,GCF_013396075.1,GCF_013396195.1,GCF_000151355.1,GCF_900007375.1,GCF_000149555.1,GCF_000143105.1,GCF_000409485.1,GCF_012550715.1,GCF_000145635.1,GCF_002865645.1,GCF_000150115.1,GCF_000149585.1,GCF_022984875.1,GCA_000170615.1,GCF_020360975.1,GCF_022578975.1,GCF_021365365.1,GCF_014066305.1,GCF_007821495.1,GCF_010093535.1,GCF_014066315.1,GCF_012971845.1,GCF_000187405.1,GCF_000804445.1,GCF_010093625.1,GCF_000298775.1,GCF_000814965.1,GCF_000151145.1,GCF_003444635.1,GCA_004359145.1,GCA_006542485.1,GCA_003184285.1,GCF_010093595.1,GCF_000187425.2,GCF_020137385.1,GCF_020744255.1,GCF_010093505.1,GCF_000182925.2,GCF_000150975.2,GCF_022829205.1,GCF_000213175.1,GCF_022830035.1,GCF_000226545.1,GCF_001773325.1,GCF_001299255.1,GCF_000150735.1,GCF_001477545.1,GCF_001653235.2,GCF_004353045.1,GCA_000496955.1,GCF_001641265.1,GCA_000315645.2,GCF_000315645.1,GCF_000769745.1,GCA_000769755.1,GCF_000516985.1,GCF_000340215.1,GCF_004355905.1,GCF_001561935.1,GCF_010093815.1,GCF_001477535.1,GCF_002105105.1,GCF_001653265.1,GCF_000150705.2,GCF_000392275.1,GCF_000349005.2,GCF_000146915.1,GCF_001723175.1,GCF_004337985.1,GCF_015533775.1,GCF_000226395.1,GCF_001500285.1,GCF_002072235.1,GCF_001642045.1,GCA_002072375.1,GCF_022605165.1,GCF_000149985.1,GCF_001662655.1,GCF_002105095.1,GCF_001890105.1,GCF_900074925.1,GCF_000968595.1,GCA_000968595.1,GCF_000835555.1,GCF_003711515.1,GCF_000732125.1,GCF_000820605.1,GCF_001661265.1,GCF_000004155.1,GCA_001630435.1,GCF_000149845.2,GCF_000182805.3,GCF_000320565.1,GCF_000150505.1,GCF_000961545.1,GCF_000146945.2,GCF_001896365.1,GCF_020726525.1,GCF_003025105.1,GCF_001907595.1,GCF_000171015.1,GCF_000151125.1,GCF_003025115.1,GCF_001481775.2,GCA_001990665.1,GCA_002838845.1,GCF_003025095.1,GCF_009556855.1,GCF_000001985.1,GCF_010094035.1,GCF_024521635.1,GCF_021365285.1,GCA_001270325.1,GCF_000167675.1,GCF_000151425.1,GCF_013368755.1,GCF_000003125.1,GCF_000226115.1,GCF_000226095.1,GCF_000151505.1,GCF_000170995.1,GCF_000003515.1,GCF_000687475.1,GCF_000150825.1,GCF_000150675.1,GCF_003357145.1,GCF_000836295.1,GCF_003724135.2,GCF_010094085.1,GCF_022495145.1,GCF_001619985.1,GCF_010093935.1,GCF_000219625.1,GCA_002571405.2,GCF_000146045.2,GCA_002057885.1,GCA_002250225.1,GCA_000300575.2,GCF_000300555.1,GCF_003144295.1,GCF_003942205.1,GCF_022376445.1,GCF_001720205.1,GCF_015039405.1,GCA_016772295.1,GCF_000182895.1,GCF_000185945.1,GCF_003144195.1,GCA_000091045.1,GCF_000149245.1,GCF_000149385.1,GCF_000091045.1,GCA_000182895.1,GCF_001027345.1,GCF_000271625.1,GCF_001720155.1,GCF_025882075.1,GCF_000292625.1,GCF_000275845.1,GCF_022376455.1,GCF_021052385.1,GCF_000271605.1,GCF_000313525.1,GCA_000344655.2,GCA_012655175.1,GCA_000338035.1,GCF_019112545.1,GCA_002760635.1,GCF_000344685.1,GCF_000320585.1,GCF_003144245.1,GCF_000512585.1,GCF_000512565.1,GCF_002102565.1,GCF_000507465.1,GCF_000512605.1,GCF_008629635.1,GCF_000143565.1,GCF_000181695.1,GCF_014461135.1,GCF_003144205.1,GCF_000708205.1,GCF_001278385.1,GCF_003290485.1,GCF_000349305.1,GCF_000300595.1,GCF_003144135.1,GCA_000006255.1,GCF_024613125.1,GCF_002117355.1,GCF_000264995.1,GCF_001329695.1,GCF_022264815.1,GCF_016906535.1,GCF_000320785.1,GCA_000313545.1,GCF_016758785.1,GCF_016758775.1,GCF_000143185.2,GCF_003851025.1,GCF_016758755.1,GCF_016647785.1,GCF_000264905.1,GCF_016628075.1,GCF_016647745.1,GCF_016647625.1,GCF_016647635.1,GCF_000711695.1,GCF_000293215.1,GCF_000271585.1,GCF_003144115.1,GCF_000400465.1,GCF_000263375.1,GCF_000230375.1,GCF_001661345.1,GCF_011074885.1,GCF_001661335.1,GCF_011074865.1,GCA_000410855.1,GCF_000182965.3,GCF_003013715.1,GCF_002775015.1,GCF_000026945.1,GCF_002926085.2,GCF_000002545.3,GCF_002926055.2,GCF_001661405.1,GCF_024610255.1,GCF_000003835.1,GCF_024628925.1,GCF_000315875.1,GCF_023343755.1,GCF_000182765.1,GCF_003013735.1,GCF_024610245.1,GCF_019202705.1,GCF_024610275.1,GCF_000006335.3,GCF_001447935.2,GCF_000006445.2,GCF_008704595.1,GCF_000235365.1,GCF_000091025.4,GCF_001548555.1,GCF_001661395.1,GCF_000304475.1,GCF_903064755.1,GCF_000576695.1,GCA_001417885.1,GCF_000002515.2,GCA_002151565.1,GCA_001417835.1,GCF_001417885.1,GCF_000348985.1,GCA_001708105.1,GCF_000027005.1,GCA_001746955.1,GCF_000149685.1,GCF_000938715.1,GCF_000142805.1,GCF_001664035.1,GCF_000149425.1,GCF_000237345.1,GCF_000227115.2,GCF_019207475.1,GCF_019207285.1,GCF_000187245.1,GCF_020536065.1,GCF_001664045.1,GCF_003054445.1,GCF_001661235.1,GCA_000769245.1,GCF_001298625.1,GCF_902498895.1,GCF_001640025.1,GCF_020623625.1,GCF_002079055.1,GCF_000223485.1,GCF_019049425.1,GCF_000209165.1,GCF_001661415.1,GCF_000315915.1,GCF_000243375.1,GCF_014133895.1,GCF_000236905.1,GCF_000150035.1,GCF_001661255.1,GCF_000313485.1,GCF_002251995.1,GCF_000002525.2,GCF_000223465.1,GCF_013402915.1,GCF_000026365.1,GCF_011745365.1,GCF_001632365.1,GCF_000203795.2,GCF_025602895.1,GCF_025526975.1,GCF_000203795.1,GCF_006535985.1,GCF_000182565.1,GCF_003019875.1,GCF_000218685.1,GCA_000218725.1,GCF_018924745.1,GCF_000002945.1,GCF_025118155.1,GCF_025024155.1,GCF_025201335.1,GCF_025201355.1,GCF_025024165.1,GCF_002104995.1,GCF_002105155.1,GCF_025528875.1,GCA_000240685.2,GCA_010203745.1,GCF_025094135.1,GCF_001638985.1,GCF_002708625.1,GCF_025331425.1,GCF_025399195.1,GCF_025766255.1,GCF_000439145.1,GCF_017499595.1,GCF_000091225.2,GCF_000091225.1,GCF_000277815.2,GCF_000146465.1,GCF_000280035.1,GCF_000760515.2,GCF_000738915.1,GCF_000988165.1,GCF_024244095.1,GCF_021653875.1,GCF_024244105.1,GCF_000250985.1,GCF_000803265.1,GCF_000231115.1,GCF_000192795.1,GCF_000359705.1,GCF_014466165.1,GCF_000151645.1,GCF_000002495.2,GCF_000204055.1,GCF_000149925.1,GCF_021901695.1,GCF_021015755.1,GCF_000417875.1,GCF_000497045.1,GCF_000747765.1,GCA_000517465.1,GCF_000403515.1,GCF_005498985.1,GCF_900519145.1,GCF_000328475.2,GCF_000354255.1,GCF_026914185.1,GCF_000271645.1, https://hgdownload.soe.ucsc.edu/hubs/fungi/index.html
https://hgdownload.soe.ucsc.edu/hubs/invertebrate/hub.txt Invertebrate assemblies Invertebrate genome assemblies 2021-03-01 17:07:41 598 GCA_905333045.1,GCF_000005575.2,GCF_943734845.2,GCA_002216045.1,GCF_000220905.1,GCF_003710045.2,GCF_021461395.2,GCF_020809275.1,GCF_018991925.1,GCF_943734745.1,GCA_022747625.1,GCA_022747635.1,GCA_900088365.1,GCF_000764305.2,GCA_001587735.2,GCF_000143395.1,GCF_001594045.1,GCF_001594065.2,GCF_021464435.1,GCA_025532165.1,GCF_001313825.1,GCF_003651465.1,GCF_005281655.2,GCF_010583005.1,GCF_002006095.1,GCF_001594075.2,GCF_003070985.1,GCF_001594115.1,GCF_001594055.1,GCF_000949405.1,GCA_902439185.1,GCA_948098885.1,GCA_017140985.1,GCF_002803265.2,GCA_008086715.1,GCF_013731165.1,GCF_000217595.1,GCF_000475195.1,GCF_004193835.1,GCF_004193835.2,GCF_014083535.2,GCF_000390285.2,GCF_013141755.1,GCF_000836235.1,GCF_000836235.2,GCA_018104305.1,GCF_006496715.1,GCA_001444175.2,GCF_006496715.2,GCF_001442555.1,GCF_028750875.1,GCF_000517525.1,GCF_026875155.1,GCF_009602425.1,GCF_000699065.1,GCF_022045245.1,GCF_000002995.4,GCF_000671375.1,GCF_015706575.1,GCF_000648675.2,GCF_024516045.1,GCF_011952205.1,GCF_024542735.1,GCF_014825855.1,GCF_011952275.1,GCF_011952255.1,GCF_001652005.2,GCF_013123115.1,GCF_001272555.1,GCF_001483705.2,GCF_011392965.1,GCF_026225885.1,GCF_001263275.1,GCF_026283585.1,GCF_011865705.1,GCA_011316535.1,GCF_914767665.1,GCF_001412225.1,GCF_000648695.1,GCF_001625305.1,GCA_019425515.1,GCF_023158985.2,GCF_902652985.1,GCA_022045225.1,GCA_022045235.1,GCA_001735545.1,GCF_015345945.1,GCF_015228065.2,GCA_905163515.1,GCF_002892825.2,GCF_016920785.2,GCA_905220585.1,GCF_003918875.1,GCF_000457365.1,GCF_947242115.1,GCF_022605725.1,GCF_001039355.2,GCF_905147365.1,GCF_013339695.2,GCF_000696795.2,GCF_014356525.1,GCF_014356525.2,GCF_000757685.1,GCF_000214255.1,GCF_910591885.1,GCA_009739505.2,GCA_905187585.1,GCA_019049475.1,GCA_905147385.1,GCF_905404315.1,GCA_905220545.1,GCA_905404155.1,GCF_905475465.1,GCF_002938995.1,GCF_003590095.1,GCA_905163435.1,GCF_001856805.1,GCF_905147795.1,GCA_021869935.1,GCF_021869535.1,GCF_000002075.1,GCF_001194135.2,GCF_001194135.1,GCF_003426905.1,GCF_021461385.2,GCA_004765925.1,GCF_024679095.1,GCF_014898815.1,GCF_003672135.1,GCF_905220415.1,GCA_003425675.2,GCF_917208135.1,GCF_000344095.2,GCF_000500325.1,GCA_905404135.1,GCA_905333005.1,GCF_000188095.3,GCF_008802855.1,GCF_015586225.1,GCF_905475395.1,GCF_000365465.3,GCF_932274485.1,GCF_000836215.1,GCF_010416935.1,GCF_021134715.1,GCF_912999745.1,GCF_001298355.1,GCF_022581195.2,GCF_003676215.2,GCA_917880025.4,GCF_004010815.1,GCF_020184175.1,GCA_020184165.1,GCF_002156985.1,GCF_023701775.1,GCF_011630105.1,GCF_001949145.1,GCF_019059575.1,GCF_020631705.1,GCF_003990815.1,GCF_021234035.1,GCF_000591075.1,GCF_017312705.1,GCF_011947565.2,GCF_011947565.3,GCA_011033025.1,GCA_000695325.1,GCF_921293095.1,GCF_023897955.1,GCA_019096205.1,GCF_905116875.1,GCF_932276165.1,GCF_012273895.1,GCF_014905235.1,GCA_905163495.1,GCA_905220475.1,GCF_006345805.1,GCF_002022765.2,GCF_000699045.2,GCA_019425605.1,GCA_022419445.1,GCF_910589235.1,GCF_001901225.1,GCF_001465965.1,GCF_905147045.1,GCF_902459465.1,GCA_902459445.1,GCF_000183805.2,GCF_011064685.2,GCF_023101765.2,GCF_000524195.1,GCA_002269645.1,GCF_000699445.2,GCF_000699445.3,GCF_000237925.1,GCF_019202785.1,GCF_024586455.1,GCF_003227725.1,GCF_000003815.2,GCF_027943255.1,GCF_014529535.1,GCA_014529535.2,GCF_001853355.1,GCF_029603195.1,GCF_009650485.2,GCF_017639315.1,GCF_003285975.2,GCF_001654025.1,GCA_005876895.1,GCF_000233415.1,GCF_025231255.1,GCF_018148935.1,GCF_000236285.1,GCF_018153845.1,GCF_011750605.1,GCF_000224195.1,GCF_018152505.1,GCF_003286155.1,GCF_000236325.1,GCF_018153835.1,GCF_000220665.1,GCF_018152265.1,GCF_000005155.2,GCF_018153295.1,GCF_900245975.1,GCF_003285905.1,GCF_004354385.1,GCA_004354385.2,GCF_000224215.1,GCF_018152535.1,GCA_008121275.1,GCF_004382145.1,GCF_000001215.4,GCF_003369915.1,GCF_000005175.2,GCF_018153725.1,GCF_001654015.2,GCA_024703675.1,GCF_003285875.2,GCF_018151105.1,GCF_002217835.1,GCA_005876975.1,GCF_003286085.1,GCF_009870125.1,GCF_000236305.1,GCF_018152115.1,GCF_016746245.2,GCF_004382195.2,GCF_002093755.2,GCF_016746395.2,GCF_008121235.1,GCF_014743375.2,GCA_018150745.1,GCF_013340165.1,GCF_000224235.1,GCF_018152695.1,GCF_016746235.2,GCF_003285735.1,GCA_007989325.2,GCF_018902025.1,GCF_000005925.1,GCF_016746365.2,GCF_905115235.1,GCF_024334085.1,GCF_024763615.1,GCF_003285725.1,GCF_002237135.1,GCA_002600895.1,GCF_025200985.1,GCF_016097555.1,GCF_003073045.1,GCA_003018175.1,GCA_000762945.2,GCF_000469605.1,GCF_905220565.1,GCF_021130785.1,GCA_019973935.1,GCA_025091365.1,GCF_023864345.2,GCA_900036025.1,GCF_003640425.2,GCF_026898425.1,GCF_001856785.1,GCF_018143015.1,GCA_905404095.1,GCA_002082055.1,GCA_014858695.1,GCF_000003605.2,GCA_905404265.1,GCF_014066325.1,GCA_905187575.1,GCF_003254395.2,GCF_002443255.1,GCF_002443255.2,GCA_019022885.1,GCF_000371365.1,GCF_000006295.1,GCF_000004095.1,GCF_021155765.1,GCF_021155785.1,GCF_021901495.1,GCF_000612105.2,GCF_027563975.1,GCF_003227715.2,GCF_009193385.2,GCA_019049465.1,GCA_001663935.1,GCF_905147105.1,GCA_905220335.1,GCA_000340355.2,GCF_000002845.2,GCF_000227135.1,GCF_000002875.2,GCF_000002725.2,GCF_000234665.1,GCF_000755165.1,GCA_009770625.1,GCF_001293395.1,GCF_000956235.1,GCF_000184785.3,GCA_024610695.1,GCA_024610705.1,GCF_000002765.5,GCF_945859705.1,GCA_012273795.1,GCA_902829235.1,GCF_905333055.1,GCF_000347755.3,GCF_028554725.1,GCF_000806345.2,GCF_028408465.1,GCF_023375885.1,GCF_013339745.2,GCF_028296485.1,GCF_002532875.2,GCF_009731565.1,GCF_943734635.1,GCF_943734755.1,GCF_013758885.1,GCF_943734665.1,GCF_016920715.1,GCF_016920705.1,GCF_943734685.1,GCF_943734695.1,GCF_943734725.1,GCF_017562075.2,GCF_943737925.1,GCF_029784155.1,GCF_943734655.1,GCF_029784135.1,GCA_910591435.1,GCA_910594945.1,GCA_905333075.2,GCA_905475315.1,GCA_905220435.1,GCF_001186105.1,GCA_905340225.1,GCA_905147355.1,GCA_907269095.1,GCA_905147135.1,GCA_910589605.1,GCA_905475355.1,GCA_907269065.1,GCA_019059595.1,GCA_905163465.1,GCA_910589575.1,GCA_014607495.2,GCA_910591565.1,GCA_905220455.1,GCA_905163395.1,GCA_017562165.1,GCA_910589525.1,GCA_905147225.1,GCA_905147235.1,GCA_905332915.1,GCA_905147375.1,GCA_907164795.1,GCF_003589595.1,GCA_905147285.1,GCA_907165245.1,GCA_905404275.1,GCA_905147015.1,GCA_905220505.1,GCA_910589285.1,GCA_905147345.1,GCA_905332985.1,GCA_905147325.1,GCA_905163415.1,GCA_910589295.1,GCA_905163555.1,GCA_905475445.1,GCA_905404295.1,GCA_905147815.2,GCA_905147745.1,GCA_910589355.1,GCA_905333125.1,GCF_002706865.2,GCA_905220595.1,GCA_905147785.1,GCA_910589645.1,GCA_905220615.1,GCA_905147715.2,GCA_910592155.1,GCA_907165275.1,GCA_907165235.1,GCF_023078275.1,GCA_905404285.1,GCF_000355655.1,GCF_020466585.1,GCA_013339895.1,GCF_000004555.2,GCA_003052745.1,GCF_000149515.1,GCF_010183535.1,GCA_000186765.1,GCF_000507365.1,GCA_013425905.1,GCA_901765185.1,GCA_901765195.1,GCA_901779485.1,GCF_001040885.1,GCF_000181795.1,GCF_016801865.2,GCF_014805675.1,GCF_021730395.1,GCF_001188975.3,GCA_905404175.1,GCF_009176505.1,GCF_012274295.1,GCF_023373825.1,GCF_000789215.1,GCA_022674325.1,GCA_015104395.1,GCF_000327385.1,GCF_019649055.1,GCA_000297895.2,GCF_902806645.1,GCF_003789085.1,GCF_905220365.1,GCF_015342785.2,GCF_000204515.1,GCF_000165425.1,GCF_005508785.2,GCA_905404145.1,GCF_013373865.1,GCA_010367685.1,GCA_905475405.1,GCF_024362695.1,GCF_029784165.1,GCF_000150275.1,GCA_003344405.1,GCF_025612915.1,GCA_008528875.1,GCF_000485595.1,GCF_000002235.5,GCA_000695345.1,GCF_016617805.1,GCA_001949185.1,GCF_003343065.1,GCA_023055495.1,GCF_023055435.1,GCF_905147765.1,GCF_000188075.2,GCF_016802725.1,GCF_000002335.3,GCF_000187915.1,GCF_907164935.1,GCF_001313835.1,GCA_025618425.1,GCF_020424385.1,GCF_001263575.1,GCF_021901455.1,GCA_907269075.1,GCF_002938485.1,GCF_902806685.1,GCA_016617965.1,GCA_019925205.1,GCF_000002985.6,GCF_001186385.1,GCA_001465515.1,GCF_016086655.3,GCA_917862395.1,GCF_001417965.1,GCA_000934455.1,GCF_000326865.2,GCF_907165205.1,GCA_025617745.1,GCA_905231865.2,GCA_905146925.1,GCA_910589475.1,GCA_003335185.2,GCA_014465815.1,GCF_001937115.1,GCF_024364675.1,GCA_905147175.1,GCF_001687245.2,GCF_004324835.1,GCF_021976095.1,GCF_026914265.1,GCF_023864275.1,GCF_000715545.1,GCF_013339725.1,GCA_013339725.1,GCA_000181235.2,GCA_013435995.1,GCF_015732765.1,GCA_009928515.1,GCF_905163445.1,GCF_010614865.1,GCF_026930045.1,GCF_000090795.2,GCF_002217175.1,GCF_023614345.1,GCF_900239965.1,GCF_001015335.1,GCF_013122585.1,GCA_023349385.1,GCA_023349425.1,GCA_023634265.1,GCA_023634235.1,GCF_932526225.1,GCF_000209225.1,GCF_000222465.1,GCF_013753865.1,GCF_004143615.1,GCF_002042975.1,GCF_003704095.1,GCF_002571385.2,GCF_009176525.2,GCF_001854935.1,GCF_022113875.1,GCF_017591435.1,GCF_002891405.2,GCF_000696155.1,GCF_012932325.1,GCF_013339745.1,GCA_007210705.1,GCF_014839805.1,GCF_000002445.2,GCF_000210295.1,GCA_003013265.1,GCF_003719485.1,GCF_000209065.1,GCF_000691245.1,GCF_003719475.1,GCF_002087225.1,GCF_014805625.2,GCA_000444245.1,GCA_004367955.1,GCA_004368075.1,GCA_013436065.1,GCA_013436055.1,GCA_004367975.1,GCA_004367875.1,GCA_000209555.1,GCA_004367895.1,GCA_004367855.1,GCF_000239435.1,GCF_023898315.1,GCF_000224145.3,GCF_010614865.2,GCA_023053555.1,GCA_023053575.1,GCA_023053545.1,GCA_003260075.1,GCF_014905175.1,GCF_010883055.1,GCF_000648655.2,GCF_020080835.1,GCF_013357705.1,GCF_000503995.2,GCF_001412515.2,GCF_000806365.1,GCF_019393585.1,GCF_015476425.1,GCF_000572035.2,GCF_026212275.2,GCF_000599845.2,GCF_019457755.1,GCF_912470025.1,GCF_905475345.1,GCA_001010745.2,GCF_917563875.1,GCF_003013835.1,GCF_000697945.2,GCF_000697945.3,GCF_000255335.2,GCF_014466175.1,GCF_000341935.2,GCF_021155775.1,GCA_014356515.1,GCF_003987935.1,GCA_013282895.1,GCA_002204515.1,GCF_002204515.2,GCF_003268045.1,GCF_002113885.1,GCF_020536995.1, https://hgdownload.soe.ucsc.edu/hubs/invertebrate/index.html
https://hgdownload.soe.ucsc.edu/hubs/mammals/hub.txt Mammal assemblies Mammal genome assemblies 2020-05-18 16:48:55 409 GCF_000298275.1,GCA_011750645.1,GCA_011762545.1,GCF_011762505.1,GCA_001887905.1,GCF_000001905.1,GCF_016433145.1,GCF_000164845.4,GCF_001458135.2,GCF_001984765.1,GCF_000754665.1,GCA_024610745.1,GCA_024610735.1,GCF_020975775.1,GCA_900108605.1,GCF_020171115.1,GCF_000292845.1,GCF_014633375.1,GCF_000464555.1,GCA_000978805.1,GCA_004026545.1,GCA_002201775.1,GCF_000803125.2,GCF_018345385.1,GCF_003426925.1,GCA_004024585.1,GCA_024166345.1,GCF_024166365.1,GCA_004024905.1,GCF_016077325.2,GCF_001305755.1,GCA_015852515.1,GCF_015852505.1,GCF_000767855.1,GCA_004023785.1,GCF_902806735.1,GCF_019054845.1,GCA_009917745.1,GCF_002288925.2,GCF_000308155.1,GCF_027574615.1,GCA_004026945.1,GCF_000325575.1,GCF_011064425.1,GCA_004023925.1,GCF_017591425.1,GCA_020826845.1,GCA_020826835.1,GCA_004027315.1,GCA_025094165.1,GCA_025265405.1,GCA_008658375.1,GCA_008658375.2,GCF_009873245.2,GCA_022079275.1,GCF_022079265.1,GCA_024803775.1,GCA_024803745.1,GCA_004363515.1,GCF_000412655.1,GCA_004025005.1,GCA_000688575.1,GCA_004025025.1,GCF_023065955.1,GCF_003584765.2,GCA_004027775.1,GCF_007827085.1,GCA_009762295.2,GCA_009762295.1,GCF_009762305.2,GCF_900631625.1,GCA_028537955.1,GCA_028537755.1,GCA_007474575.1,GCA_007474575.2,GCF_007474595.2,GCA_004027415.1,GCF_000299155.1,GCF_000296735.1,GCA_004026925.1,GCA_004027455.1,GCF_029407905.1,GCF_002263795.2,GCA_004024745.2,GCF_027475565.1,GCF_003709585.1,GCF_022376915.1,GCF_003668045.3,GCF_000223135.1,GCA_900186095.1,GCF_014570555.1,GCA_000738955.1,GCA_001888835.1,GCF_000334495.1,GCA_000400835.1,GCA_011762515.1,GCA_011762535.1,GCF_011762595.1,GCF_001922835.1,GCA_011100645.1,GCF_011100635.1,GCA_903992545.1,GCA_004026625.1,GCF_022682495.1,GCF_002940915.2,GCF_016906955.1,GCF_900497805.2,GCF_018167655.1,GCA_004026905.1,GCA_004364475.1,GCF_000743615.1,GCF_012274545.1,GCA_004026965.1,GCA_002406435.1,GCF_000327345.1,GCF_000260255.1,GCF_943737965.1,GCA_004027915.1,GCF_012295265.1,GCF_003254725.2,GCF_000002285.3,GCF_000002285.5,GCF_011100685.1,GCF_014441545.1,GCA_000181335.5,GCF_000181335.3,GCF_018350175.1,GCF_011764305.1,GCA_000239315.1,GCF_000151735.1,GCA_004023845.1,GCA_004024925.1,GCA_020854095.1,GCF_001466805.2,GCF_014176215.1,GCA_004027535.1,GCF_019320065.1,GCA_009829165.1,GCF_009829155.1,GCF_922984935.1,GCA_922990625.1,GCA_902685485.1,GCA_902686455.1,GCF_902655055.1,GCF_903992535.2,GCF_000181275.1,GCF_027595985.1,GCF_947179515.1,GCA_004027185.1,GCF_907164565.1,GCA_002215935.1,GCF_022837055.1,GCF_000243295.1,GCA_004023885.1,GCA_004027575.1,GCA_017311355.1,GCA_007844835.1,GCF_018350155.1,GCA_004026745.1,GCA_004024605.1,GCF_002007445.2,GCF_001704415.2,GCA_004027895.1,GCF_017639785.1,GCF_000349665.1,GCF_903995435.1,GCA_004024945.1,GCF_012393455.1,GCF_000002295.2,GCA_027917375.1,GCA_027887165.1,GCF_902686445.1,GCA_905319855.2,GCF_001890085.2,GCA_004026585.1,GCA_004025085.1,GCA_004115295.1,GCF_004115265.2,GCF_014108235.1,GCF_019186645.2,GCA_004363415.1,GCA_004026765.1,GCA_004363495.1,GCF_004348235.1,GCF_002201575.2,GCA_004027005.1,GCA_002995585.1,GCA_004027065.1,GCA_004027495.1,GCA_004363575.1,GCA_004025045.1,GCA_000164785.2,GCA_004027555.1,GCF_014824575.3,GCF_002863925.1,GCA_001624185.1,GCA_921998555.2,GCA_001624295.1,GCA_001624215.1,GCA_001632525.1,GCA_001632575.1,GCF_000001635.27,GCA_001632555.1,GCA_001624445.1,GCA_001624475.1,GCA_001624505.1,GCA_001624535.1,GCA_001632615.1,GCA_001624675.1,GCA_001624745.1,GCA_001624775.1,GCA_001624835.1,GCA_003369685.2,GCF_003369695.1,GCF_014898055.3,GCA_004026885.1,GCF_902729225.1,GCA_004027635.1,GCA_004363435.1,GCA_004023805.1,GCF_014898765.1,GCF_014825515.1,GCF_021234435.1,GCA_004024965.1,GCF_000331955.2,GCF_937001465.1,GCF_002099425.1,GCF_014108245.1,GCF_000151845.1,GCA_004365275.1,GCF_001857705.1,GCF_024362965.1,GCF_016509475.1,GCF_000280705.1,GCA_020740715.1,GCF_020740685.1,GCA_002007465.1,GCF_018350215.1,GCF_000147115.1,GCA_024363435.1,GCA_024363575.1,GCA_004026665.1,GCF_006547405.1,GCF_000276665.1,GCA_004027375.1,GCA_004365215.1,GCF_001685135.1,GCF_014570535.1,GCA_024711525.1,GCA_024711535.1,GCA_001651235.1,GCA_004024765.1,GCF_006229205.1,GCF_000493695.1,GCF_002204375.1,GCA_008131255.1,GCA_019395325.1,GCF_019393635.1,GCA_004027695.1,GCA_004027875.1,GCA_004026605.1,GCF_000247695.1,GCA_014060925.1,GCF_005190385.1,GCF_001595765.1,GCF_014824575.2,GCA_004026825.1,GCF_000208655.3,GCA_026167925.1,GCA_026229955.1,GCA_004363455.1,GCF_010015895.1,GCA_029215635.1,GCA_029215605.1,GCF_021288785.2,GCA_004023865.1,GCF_003265705.1,GCA_004027205.1,GCA_001685095.1,GCA_004027795.1,GCA_015244455.1,GCF_015227675.2,GCF_000002265.2,GCF_000001895.5,GCA_023515785.1,GCA_021556685.1,GCA_023515805.1,GCA_004027025.1,GCA_001660835.1,GCF_000151885.1,GCA_004027595.1,GCA_004363475.1,GCF_023159225.1,GCF_000321225.1,GCF_003676395.1,GCA_004115245.1,GCA_004115245.2,GCF_004126475.2,GCF_014108415.1,GCA_000465405.1,GCF_021234165.1,GCA_004027295.1,GCA_002443075.1,GCA_027409165.1,GCF_000003025.6,GCA_002844635.1,GCF_021613505.1,GCA_004115175.2,GCF_004115215.2,GCF_000687225.1,GCF_017311325.1,GCF_000500345.1,GCF_003704035.1,GCF_000317375.1,GCA_021018645.1,GCF_000696695.1,GCF_003327715.1,GCA_028749985.1,GCA_028749965.1,GCA_004363535.1,GCA_004363705.1,GCA_026419965.1,GCA_026419985.1,GCF_009806435.1,GCF_000003625.3,GCF_905146905.1,GCF_002742125.1,GCF_016772045.1,GCA_004024625.1,GCA_004026805.1,GCF_910594005.1,GCF_003160815.1,GCF_014885135.2,GCA_004026565.1,GCF_900094665.2,GCA_015443085.1,GCA_004024985.1,GCA_004026525.1,GCF_014754425.2,GCA_004027955.1,GCF_002288905.1,GCA_004027735.1,GCA_000298735.2,GCF_900095145.1,GCA_004024705.1,GCF_000313985.2,GCF_023721935.1,GCA_004026855.1,GCA_004027165.1,GCA_004024805.1,GCF_011800145.1,GCF_903995425.1,GCF_008632895.1,GCA_023853755.1,GCA_023851605.1,GCA_004025125.1,GCA_015220265.1,GCF_015220235.1,GCF_000283155.1,GCA_004027085.1,GCF_002837175.3,GCF_000260355.1,GCF_004028035.1,GCA_004024685.1,GCA_003336285.1,GCA_000465285.1,GCA_004024845.1,GCA_004023945.1,GCF_003009895.1,GCA_002844835.1,GCF_000696425.1,GCA_004027255.1,GCA_004027475.1,GCF_023091745.1,GCA_004026705.1,GCF_902635505.1,GCF_016881025.1,GCF_018350195.1,GCA_026230055.1,GCA_026230045.1,GCA_001685075.1,GCF_000622305.1,GCA_008692045.1,GCF_008692025.1,GCF_003121395.1,GCF_019923935.1,GCF_000349705.1,GCF_000296755.1,GCA_004023965.1,GCF_004664715.2,GCF_002102435.1,GCA_024140225.1,GCF_024139225.1,GCF_009834535.1,GCF_000311805.1,GCA_000978405.1,GCA_001624865.1,GCF_000298355.1,GCF_021218885.1,GCA_004027655.1,GCF_004785775.1,GCF_003031525.2,GCF_000442215.2,GCF_003676075.3,GCF_016432865.1,GCA_004026845.1,GCA_028536395.1,GCA_028538775.1,GCF_000247795.1, https://hgdownload.soe.ucsc.edu/hubs/mammals/index.html
https://hgdownload.soe.ucsc.edu/hubs/plants/hub.txt Plant assemblies Plant genome assemblies 2021-01-07 11:44:13 230 GCF_016808095.1,GCF_001190045.1,GCF_000442705.1,GCF_000147395.1,GCF_004799145.1,GCF_902201215.1,GCF_022539505.1,GCF_937616625.1,GCF_002114115.1,GCF_014843425.1,GCF_000219495.3,GCA_002024945.1,GCF_003473485.1,GCA_028538565.1,GCA_028534965.1,GCF_002917755.1,GCA_019985075.1,GCA_019985065.2,GCF_001995035.1,GCA_028534865.1,GCA_028534895.1,GCF_000002775.5,GCF_004153795.1,GCA_907166925.1,GCF_018294505.1,GCF_000208745.1,GCA_023349545.1,GCA_023349395.1,GCA_028535905.1,GCA_028535815.1,GCF_900626175.2,GCA_001865755.1,GCA_003660325.2,GCF_000710875.1,GCF_001625215.1,GCF_001659605.2,GCF_000151685.1,GCF_019578655.1,GCF_023119035.1,GCF_000331145.1,GCF_002994745.2,GCA_024364735.1,GCF_000315295.1,GCF_019419815.1,GCF_000493195.1,GCF_947179165.1,GCF_000143415.4,GCA_001021135.1,GCF_003713225.1,GCF_003713205.1,GCF_000499845.1,GCF_000826755.1,GCF_020796205.1,GCF_002127325.2,GCF_000715135.1,GCF_002906115.2,GCF_000987745.1,GCF_007990345.1,GCF_000327365.1,GCF_004118075.2,GCF_002738365.1,GCF_000004075.3,GCA_001662545.1,GCF_009389715.1,GCF_000413155.1,GCF_014633365.1,GCF_904849725.1,GCF_002303985.1,GCA_000787875.1,GCF_932294415.1,GCF_001411555.2,GCF_002878395.1,GCF_004785595.1,GCF_004379255.1,GCF_000495115.2,GCF_916048215.2,GCA_000831365.1,GCF_000633955.1,GCF_000309985.2,GCA_002180455.1,GCF_000263155.2,GCF_001876935.1,GCF_024323335.1,GCF_029017545.1,GCF_018446385.1,GCF_001531365.2,GCF_002575655.1,GCF_001957025.1,GCA_003024255.1,GCA_001981405.1,GCF_000733215.1,GCF_002220235.1,GCF_000002595.2,GCA_026108075.1,GCF_000258705.1,GCF_000147415.1,GCA_000708835.1,GCF_000090985.2,GCF_000611645.1,GCF_000151265.2,GCF_000092065.1,GCF_000214015.3,GCF_000143455.1,GCF_009805555.1,GCF_005286985.1,GCA_002240015.2,GCF_002211085.1,GCF_907164915.1,GCF_010389155.1,GCF_003935025.1,GCA_023055485.1,GCA_023055345.1,GCA_028535165.1,GCA_028535515.1,GCF_000346735.1,GCF_001879475.1,GCF_001433935.1,GCA_001602275.1,GCF_002870075.4,GCA_000227445.1,GCF_000004255.2,GCF_013358625.1,GCA_000949345.1,GCF_902167145.1,GCF_000231095.2,GCF_011075055.1,GCF_002575655.2,GCF_000002425.4,GCF_000414095.1,GCF_000741045.1,GCF_025177605.1,GCF_000313045.1,GCF_001865875.1,GCF_018873765.1,GCF_003573695.1,GCF_001605985.2,GCF_001263595.1,GCF_000150535.2,GCF_000346465.2,GCF_003086295.2,GCA_002174835.2,GCF_018687715.1,GCF_019359855.1,GCF_000327365.2,GCF_025698545.1,GCF_000340665.2,GCF_001540865.1,GCF_000375325.1,GCF_008641045.1,GCF_008831285.2,GCF_007655135.1,GCF_019186545.1,GCA_010127505.1,GCF_000226075.1,GCA_020169555.1,GCA_020169535.1,GCA_020169585.1,GCA_020169575.1,GCA_014189475.1,GCA_014189305.1,GCF_900185275.1,GCF_001683475.1,GCF_000801105.1,GCF_000686985.2,GCF_020379485.1,GCF_020283565.1,GCF_003073215.2,GCF_018835915.1,GCF_004353265.1,GCF_016545825.1,GCF_000612305.1,GCF_006381635.1,GCF_001654055.1,GCF_000365185.1,GCF_000478725.1,GCA_023055565.1,GCA_023055425.1,GCF_004379255.2,GCF_900635055.1,GCF_000512975.1,GCF_900635035.1,GCF_020921035.1,GCF_005239225.1,GCF_933775445.1,GCF_000003195.3,GCA_003482435.1,GCF_000004515.6,GCF_000463585.1,GCF_002007265.1,GCF_000504015.1,GCF_000005505.3,GCA_000511835.1,GCF_002207925.1,GCF_000317415.1,GCA_002525835.2,GCF_016808335.1,GCA_002319775.1,GCF_000001735.4,GCF_013401445.1,GCF_001879085.1,GCF_000390325.2,GCF_000188115.5,GCA_024363235.1,GCA_024362995.1,GCF_000612285.1,GCF_025698485.1,GCF_003576645.1,GCF_022201045.2,GCF_001633185.2,GCA_023053565.1,GCA_023053535.1,GCF_002806865.2,GCF_009727055.1,GCF_009730915.1,GCF_000695525.1,GCF_002168275.1,GCF_002162155.2,GCF_000313855.2,GCF_002742605.1,GCF_000817695.3,GCF_000816755.2,GCF_004193775.1,GCF_000184155.1,GCF_001406875.1,GCF_000003745.3,GCA_002922885.1,GCA_001920985.1,GCF_002738345.1,GCF_000393655.1,GCA_001687265.1, https://hgdownload.soe.ucsc.edu/hubs/plants/index.html
https://hgdownload.soe.ucsc.edu/hubs/primates/hub.txt Primate assemblies Primate genome assemblies 2020-10-26 10:00:55 159 GCF_000951035.1,GCA_004027145.1,GCA_004363605.1,GCF_001698545.2,GCA_004024785.1,GCA_004027715.1,GCF_016699345.2,GCF_028885625.1,GCA_004027275.1,GCF_002880755.1,GCF_028858775.1,GCA_004024645.1,GCF_000956105.1,GCA_011100615.1,GCF_012559485.2,GCA_004027615.1,GCF_000951045.1,GCF_009764315.1,GCF_003255815.1,GCF_007565055.1,GCF_000165445.2,GCF_000409795.2,GCF_015252025.1,GCA_004025065.1,GCA_018471515.1,GCA_018472595.1,GCA_018472605.1,GCA_018472575.1,GCA_018472565.1,GCA_018472585.1,GCA_018506975.1,GCA_018506955.1,GCA_018472715.1,GCA_018472765.1,GCA_018471095.1,GCA_018471105.1,GCA_018472685.1,GCA_018472725.1,GCA_018471345.1,GCA_018471075.1,GCA_018504365.1,GCA_018504645.1,GCA_018469665.1,GCA_018469695.1,GCA_018471085.1,GCA_018471065.1,GCA_018504375.1,GCA_018504045.1,GCA_018469405.1,GCA_018469675.1,GCA_018469865.1,GCA_018469965.1,GCA_018469685.1,GCA_018469705.1,GCA_018467155.1,GCA_018467165.1,GCA_018472695.1,GCA_018472705.1,GCA_018471545.1,GCA_018471555.1,GCA_018472865.1,GCA_018472845.1,GCA_018506125.1,GCA_018505855.1,GCA_018504085.1,GCA_018504055.1,GCA_018505825.1,GCA_018505865.1,GCA_018852585.1,GCA_018852595.1,GCA_018471525.1,GCA_018471535.1,GCA_018466845.1,GCA_018466835.1,GCA_018467015.1,GCA_018467005.1,GCA_018466985.1,GCA_018466855.1,GCA_018470445.1,GCA_018470435.1,GCA_018469875.1,GCA_018469925.1,GCA_018469945.1,GCA_018469955.1,GCA_018469935.1,GCA_018470425.1,GCA_018504065.1,GCA_018504075.1,GCA_018503585.1,GCA_018503575.1,GCA_018470455.1,GCA_018470465.1,GCA_018506155.1,GCA_018506165.1,GCA_018472855.1,GCA_018473305.1,GCA_018503525.1,GCA_018503245.1,GCA_018505845.1,GCA_018505835.1,GCA_018469425.1,GCA_018469415.1,GCA_018473295.1,GCA_018473315.1,GCA_018472825.1,GCA_018472835.1,GCA_021951015.1,GCA_021950905.1,GCA_018852615.1,GCA_018852605.1,GCA_018506965.1,GCA_018506945.1,GCA_018503255.1,GCA_018503285.1,GCA_018503275.1,GCA_018503265.1,GCA_018504635.1,GCA_018504625.1,GCA_018504655.1,GCA_018504665.1,GCA_016700455.2,GCA_016695395.2,GCA_004024725.1,GCF_000952055.2,GCA_004027835.1,GCF_006542625.1,GCF_008728515.1,GCF_001604975.1,GCF_024542745.1,GCF_000164805.1,GCF_000956065.1,GCA_004027105.1,GCF_000258655.2,GCF_013052645.1,GCF_029289425.1,GCA_004027335.1,GCA_004024825.1,GCF_003339765.1,GCF_020740605.2,GCF_028878055.1,GCA_001262665.1,GCF_009828535.2,GCF_027406575.1,GCF_000181295.1,GCF_000955945.1,GCF_028885655.1,GCF_002880775.1,GCA_004024885.1,GCF_009761245.1,GCF_002776525.5,GCF_008122165.1,GCF_029281585.1,GCA_004026645.1,GCA_004027755.1,GCF_009663435.1,GCA_011078405.1,GCA_011100535.1,GCA_011100555.1,GCF_011100555.1, https://hgdownload.soe.ucsc.edu/hubs/primates/index.html
https://hgdownload.soe.ucsc.edu/hubs/vertebrate/hub.txt Vertebrate assemblies Vertebrate genome assemblies 2020-05-18 16:49:15 115 GCF_003597395.1,GCF_027172205.1,GCF_017654675.1,GCF_000281125.3,GCF_014858855.1,GCF_001723895.1,GCA_026167985.1,GCA_026167975.1,GCA_027560395.1,GCF_001527695.2,GCF_000186305.1,GCA_022578425.1,GCA_022577455.1,GCF_900067755.1,GCF_000455745.1,GCF_000230535.1,GCF_000225785.1,GCF_001077635.1,GCF_004329235.1,GCF_905171765.1,GCF_001185365.1,GCF_027887155.1,GCF_900518735.1,GCF_018977255.1,GCA_020745735.1,GCA_020745765.1,GCF_905171775.1,GCF_013347855.1,GCF_019175285.1,GCF_027579735.1,GCA_902459495.1,GCF_902459505.1,GCF_001723915.1,GCF_007399415.2,GCA_007399395.1,GCA_029215685.1,GCA_029215655.1,GCF_027244095.1,GCF_016835505.1,GCF_017639515.1,GCF_000090745.1,GCF_015237465.2,GCF_000935625.1,GCF_004798865.1,GCA_024294585.1,GCF_009764565.3,GCA_009762595.1,GCF_028583425.1,GCF_028641065.1,GCF_023653815.1,GCF_900518725.1,GCA_014337955.1,GCA_947247035.1,GCA_947247025.1,GCF_025201925.1,GCA_025201965.1,GCF_017654505.1,GCA_023362785.1,GCA_023362775.1,GCA_022086895.1,GCA_022086475.1,GCF_027358695.1,GCF_013100865.1,GCF_016161935.1,GCA_023053685.1,GCA_029215795.1,GCA_029215775.1,GCA_023333525.1,GCA_023333555.1,GCA_023053675.1,GCA_023053635.1,GCA_023053665.1,GCA_009819545.1,GCF_009819535.1,GCF_001447785.1,GCA_010993595.1,GCF_010993605.1,GCF_902713615.1,GCF_009764475.1,GCA_009764485.1,GCA_024509165.1,GCA_024509115.1,GCA_023634275.1,GCA_023634205.1,GCF_000242695.1,GCA_902713435.2,GCF_010645085.2,GCF_010909765.2,GCA_010909745.1,GCF_002925995.2,GCF_016545835.1,GCF_901765095.1,GCA_901765105.1,GCF_021028975.2,GCF_000004195.4,GCF_901001135.1,GCA_901001175.1,GCA_029207655.1,GCA_029207665.1,GCF_011800845.1,GCF_019279795.1,GCA_023333635.1,GCA_023333645.1,GCF_000241765.5,GCA_026170595.1,GCA_026170395.1,GCA_029215705.1,GCA_029215755.1,GCA_009769695.1,GCF_009769535.1,GCF_001642345.1,GCF_021869965.1,GCF_004010195.1,GCF_020497125.1,GCF_022316705.1, https://hgdownload.soe.ucsc.edu/hubs/vertebrate/index.html
https://hgdownload.soe.ucsc.edu/hubs/viral/hub.txt viral assemblies Viral genome assemblies 2022-08-02 16:39:12 264 GCF_000838645.1,GCF_000864245.1,GCF_000861885.1,GCF_000864945.1,GCF_000856545.1,GCF_000895575.1,GCF_000897955.1,GCF_000899535.1,GCF_000901475.1,GCF_000850325.1,GCF_000858185.1,GCF_000847585.1,GCF_008777455.1,GCF_000849925.1,GCF_000846965.1,GCF_000906815.1,GCF_000854045.1,GCF_000885595.1,GCF_000839185.1,GCF_000854165.1,GCF_000862125.1,GCF_000871845.1,GCF_000866625.1,GCF_000865065.1,GCF_002116195.1,GCF_000850985.1,GCF_000905375.1,GCF_000862705.1,GCF_003032765.1,GCF_000862985.1,GCF_000861165.1,GCF_000861205.1,GCF_000861905.1,GCF_000872045.1,GCF_002402265.1,GCA_000844025.1,GCF_000870765.1,GCA_000847005.2,GCF_000862005.1,GCF_000856085.1,GCF_000852685.1,GCF_000856565.1,GCF_000861825.2,GCF_000861845.1,GCF_000860505.1,GCF_000859985.2,GCF_000837865.1,GCF_000838265.1,GCF_000838505.1,GCF_000839365.1,GCF_000839645.1,GCF_000841625.1,GCF_000841965.1,GCF_000845085.1,GCF_000845245.1,GCF_000845685.2,GCF_000845985.1,GCF_000846285.1,GCF_000846365.1,GCF_000846685.1,GCF_000846805.1,GCF_000847505.1,GCF_000848125.1,GCF_000848705.1,GCF_000850205.1,GCF_000853505.1,GCF_000853865.1,GCF_000855545.1,GCF_000856385.1,GCF_000857085.1,GCF_000857865.1,GCF_000857885.1,GCF_000858385.2,GCF_000858625.1,GCF_000858645.1,GCF_000858765.1,GCF_000859285.1,GCF_000859465.1,GCF_000859485.1,GCF_000859665.1,GCF_000861005.1,GCF_000861865.1,GCF_000861925.1,GCF_000861945.1,GCF_000862685.1,GCF_000862825.1,GCF_000863525.1,GCF_000863585.1,GCF_000863685.1,GCF_000863845.1,GCF_000863945.3,GCF_000863965.1,GCF_000864725.1,GCF_000864765.1,GCF_000864825.1,GCF_000864845.1,GCF_000864905.1,GCF_000864925.1,GCF_000865565.1,GCF_000865685.1,GCF_000866485.1,GCF_000866505.1,GCF_000868225.1,GCF_000869845.1,GCF_000873085.1,GCF_000874925.1,GCF_000875265.1,GCF_000880515.1,GCF_000882135.1,GCF_000882595.1,GCF_000882675.1,GCF_000882855.1,GCF_000883655.1,GCF_000883695.1,GCF_000884175.1,GCF_000884295.1,GCF_000884955.1,GCF_000885675.1,GCF_000886375.1,GCF_000888015.1,GCF_000888495.1,GCF_000889075.1,GCF_000889175.1,GCF_000889675.1,GCF_000889695.1,GCF_000890115.1,GCF_000890535.1,GCF_000891495.1,GCF_000891615.1,GCF_000896435.1,GCF_000897255.1,GCF_000898235.1,GCF_000898255.1,GCF_000898855.1,GCF_000899515.1,GCF_000899695.1,GCF_000906235.1,GCF_000907835.1,GCF_000908695.1,GCF_000908835.1,GCF_000910675.1,GCF_000912535.1,GCF_000913075.1,GCF_000913595.1,GCF_000918035.2,GCF_000918095.1,GCF_000920655.1,GCF_000923215.1,GCF_000924015.1,GCF_000929235.1,GCF_000931315.1,GCF_000973295.1,GCF_000989155.1,GCF_001184845.1,GCF_001274345.1,GCF_001310135.2,GCF_001430115.1,GCF_001448435.1,GCF_002006915.1,GCF_002153865.1,GCF_002219525.1,GCF_002219705.1,GCF_002219885.1,GCF_002271185.1,GCF_002815375.1,GCF_002815475.1,GCF_002816885.1,GCF_002817305.1,GCF_002819605.1,GCF_002821385.1,GCF_002826025.1,GCF_002826825.1,GCF_002826985.1,GCF_002827005.1,GCF_002827025.1,GCF_002827045.1,GCF_002987345.1,GCF_002987365.1,GCF_003033475.1,GCF_003033485.1,GCF_003033495.1,GCF_003033575.1,GCF_003055605.1,GCF_003726995.1,GCF_003727435.1,GCF_003972325.1,GCF_004133345.1,GCF_013088445.1,GCF_001343785.1,GCF_000864105.1,GCF_000851145.1,GCF_000866645.1,GCF_000865085.1,GCF_000865725.1,GCF_000928555.1,GCF_000820495.2,GCF_000856665.10,GCF_000906835.1,GCF_000862145.1,GCF_000863805.1,GCF_000850965.1,GCF_000905975.1,GCF_000860805.1,GCF_000851705.1,GCF_000863165.1,GCF_000851025.1,GCF_000853725.1,GCF_000857325.2,GCF_000863385.1,GCF_000854845.1,GCF_000874865.1,GCF_000901155.1,GCF_000856485.1,GCF_000843325.1,GCF_000857045.1,GCF_014621545.1,GCF_000856685.1,GCF_000866405.1,GCF_000863565.1,GCF_000863625.1,GCF_000864005.1,GCF_000863005.1,GCF_000844845.1,GCF_000853785.1,GCF_000861105.1,GCF_000854805.1,GCF_000861505.1,GCF_000856465.1,GCF_000860485.1,GCF_002815115.1,GCF_000854405.1,GCF_000859625.1,GCF_000862245.1,GCF_000847345.1,GCF_000918175.1,GCF_000862165.1,GCF_000864225.1,GCF_000880735.1,GCF_000863025.1,GCF_000866785.1,GCF_000886535.1,GCF_000854285.1,GCF_000855765.1,GCF_000864885.1,GCF_000860285.1,GCF_000855645.1,GCF_000848485.1,GCF_000860545.1,GCF_000859885.1,GCF_004789895.1,GCF_000857545.1,GCF_000851865.1,GCF_000860085.1,GCF_000858285.1,GCF_000862105.1,GCF_000850045.1,GCF_000861085.1,GCF_000850885.1,GCF_000870785.1,GCF_000845705.1,GCF_000847185.1,GCF_000857725.1,GCF_000848505.1,GCF_000882815.3, https://hgdownload.soe.ucsc.edu/hubs/viral/index.html
https://hpc.nih.gov/eyebrowse/hub.txt EyeBrowse Eye tissue specific genes and markers, derived from NEIBank and other sources 2022-01-21 14:30:22 12 hg19,bosTau6,canFam2,cavPor3,danRer6,danRer7,rn4,rheMac2,galGal3,hg17,hg18,mm9, https://hpc.nih.gov/eyebrowse/description.html
https://krishna.gs.washington.edu/download/CADD/bigWig/CADD-browserTracks/hub.txt CADD CADD Track for v1.3 to v1.6 2020-03-19 13:45:37 2 hg19,hg38, https://krishna.gs.washington.edu/download/CADD/bigWig/CADD-browserTracks/readme.md
https://orio.niehs.nih.gov/ucscview/nguyen/p53BAER/hub.txt human p53 Binding And Expression Resource (BAER) hub human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015 2018-10-26 14:32:27 1 hg19, https://orio.niehs.nih.gov/ucscview/nguyen/p53BAER/p53BAER.html
https://pmgenomics.ca/hoffmanlab/proj/bismap/trackhub/hub.txt Umap and Bismap mappability Uniquely mappable regions of genome and methylome 2016-12-22 07:30:07 4 hg38,hg19,mm9,mm10, https://www.pmgenomics.ca/hoffmanlab/proj/bismap/trackhub/index.html
https://raw.githubusercontent.com/AndyMSSMLab/UCSC_exp_meth_VNTR/main/hub.txt Exp/Meth VNTR hub Association of VNTRs with Expression and Methylation in GTEx, PCGC and PPMI 2021-01-21 12:17:37 2 hg19,hg38, https://gargp01.u.hpc.mssm.edu/ucsc_exp_meth_vntr.html
https://raw.githubusercontent.com/Iuliana-Ionita-Laza/Colocalization_tracks/master/hub.txt Coloc segments Colocalized segments of human genome for Roadmap cell types 2020-02-27 13:01:32 1 hg19, http://www.funlda.com/colocalization/track
https://raw.githubusercontent.com/Kraus-Lab/publichubs/master/breast_cancer_lncrna_pmid_26236012/hub.txt Breast Cancer lncRNA Breast Cancer lncRNA PMID 26236012 2019-02-19 09:43:06 1 hg19, https://www.ncbi.nlm.nih.gov/pubmed/26236012
https://raw.githubusercontent.com/ScrippsPipkinLab/GenomeTracks/main/hub.txt T_cell_ATAC_ChIP_Pipkin T cell ATACseq ChIPseq assembly by Pipkin lab 2020-12-10 10:48:53 1 mm10, https://github.com/ScrippsPipkinLab/GenomeTracks
https://raw.githubusercontent.com/aharon-weizmann/Corona-ORFs/master/final/hub.txt ORF Predictions RNA-Seq, Ribo_Seq, and ORF Predictions 2020-09-15 18:29:57 1 wuhCor1, https://raw.githubusercontent.com/aharon-weizmann/Corona-ORFs/master/final/docs/ORFs_predic.html
https://raw.githubusercontent.com/csaueres/fairbrothertrack/master/hub.txt Splice Site Usage Hub Splice Site Usage Values Calculated for 19 ENCODE Cell Lines from RNA-seq 2020-02-25 11:37:45 1 hg19, https://vivo.brown.edu/display/wfairbro#Research
https://raw.githubusercontent.com/drozdovapb/PeterhofYeastHub/master/hub.txt Peterhof_yeasts Peterhof_yeast 2016-01-25 08:38:35 12 sacCer3,1B_D1606_spades,1B_D1606_chromosomer,15V_P4_spades,15V_P4_chromosomer,25_25_2V_P3982_spades,25_25_2V_P3982_chromosomer,74_D964_spades,74_chromosomer,15V_P4_test,6P_33G_D373_spades,6P_33G_D373_chromosomer, https://raw.githubusercontent.com/drozdovapb/PeterhofYeastHub/master/hub_contents.html
https://raw.githubusercontent.com/mhalushka/UCSC_miRNA_barchart/master/hub.txt Human cellular microRNAome barCharts Evaluation of >10 billion small RNA-seq reads from 78 primary cell types and 42 cancer or immortalized cell lines from 3 main studies. 2017-09-11 08:08:46 1 hg38, http://genome.cshlp.org/content/early/2017/09/06/gr.222067.117.long
https://raw.githubusercontent.com/mhalushka/miROme/main/UCSC/hub.txt ABC of cellular microRNAome Advanced BarChart configuration of cellular microRNAome. Evaluation of >20 billion small RNA-seq reads from 196 primary cell types (+plasma, +platelets) across 175 main studies. 2022-03-11 15:17:58 1 hg38, https://raw.githubusercontent.com/arunhpatil/miROme/main/UCSC/description.html
https://remap.univ-amu.fr/storage/public/hubReMap2022/hub.txt ReMap 2022 Regulatory Atlas ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to ReMap2022 for more info. 2021-09-02 16:19:55 6 mm10,mm39,hg38,hg19,dm6,araTha1, https://remap.univ-amu.fr/storage/public/hubReMap2022/remapHub2022.html
https://resources.altius.org/~jvierstra/projects/footprinting.2020/hub.txt Digital genomic footprinting (Vierstra et al., 2020) Digital genomic footprinting from 243 cell & tissue types 2020-08-28 10:05:54 1 hg38, https://resources.altius.org/~jvierstra/projects/footprinting.2020/trackhub/description.html
https://s3-us-west-2.amazonaws.com/croc-paper-hub/hub.txt Croc and Bird Hub Croc, Bird, and Archosaur Assembly Hub 2014-10-20 08:45:50 45 allMis2,Anc00,Anc01,Anc02,Anc03,Anc04,Anc06,Anc07,Anc08,Anc09,Anc10,Anc11,Anc12,Anc13,Anc14,Anc15,Anc16,Anc17,Anc18,Anc19,Anc20,Anc21,Anc05,melUnd1,galGal4,ficAlb2,croPor2,ghaGan1,cheMyd1,anoCar2,anaPla1,geoFor1,strCam0,chrPic1,amaVit1,falPer1,colLiv1,falChe1,araMac1,pelSin1,apaSpi1,pseHum1,melGal1,zonAlb1,taeGut2, NULL
https://s3.amazonaws.com/DLPFC_n36/humanDLPFC/hub.txt LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD 2015-03-02 11:38:06 1 hg19, http://www.libd.org
https://s3.mpi-bn.mpg.de/data-tobias-ucsc/hub.txt TOBIAS footprint prediction Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal 2020-05-06 15:30:35 2 hg38,mm10, https://s3.mpi-bn.mpg.de/data-tobias-ucsc/README.html
https://s3.us-east-2.amazonaws.com/brainepigenome/hub.txt BrainEpigenomeHub DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples 2018-05-30 10:41:01 1 hg19, https://s3.us-east-2.amazonaws.com/brainepigenome/hg19/docs/README.html
https://trackhubs.uniprot.org/genome_annotation_tracks/UP000005640_9606_hub/hub.txt UniProt Features UniProtKB reviewed protein features mapped to the Ensembl genome assembly. 2016-08-16 12:05:14 1 hg38, http://nar.oxfordjournals.org/content/43/D1/D204
https://unibind.uio.no/static/data/20210421/UniBind_hubs_Permissive/UCSC/hub.txt UniBind 2021 permissive Hub UniBind 2021 hub for permissive direct TF-DNA interactions 2021-01-14 10:22:42 9 hg38,mm10,ce11,dm6,danRer11,spo2,sacCer3,rn6,araTha1, https://unibind.uio.no/static/data/20210421/UniBind_hubs_Permissive/UCSC/UniBind.html
https://unibind.uio.no/static/data/20210421/UniBind_hubs_Robust/UCSC/hub.txt UniBind 2021 Robust Hub UniBind 2021 hub for robust direct TF-DNA interactions 2021-01-14 10:21:40 8 hg38,mm10,ce11,dm6,danRer11,sacCer3,rn6,araTha1, https://unibind.uio.no/static/data/20210421/UniBind_hubs_Robust/UCSC/UniBind.html
https://unibind2018.uio.no/static/data/20190717/UniBind_hubs_Permissive/UCSC/hub.txt UniBind 2018 Hub UniBind: A map of direct TF-DNA interactions from ChIP-seq and TF binding profiles 2019-04-12 09:15:57 1 hg38, https://unibind2018.uio.no/static/data/20190717/UniBind_hubs_Permissive/UCSC/UniBind.html
https://vizhub.wustl.edu/VizHub/RoadmapIntegrative.txt Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis 2014-05-16 15:42:42 1 hg19, http://www.roadmapepigenomics.org/
https://vizhub.wustl.edu/VizHub/RoadmapReleaseAll.txt Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis 2012-02-10 16:34:08 2 hg19,hg38, http://www.roadmapepigenomics.org/
https://www.dfam.org/web_download/DfamHub/hub.txt Dfam database of TE families and annotations Dfam database of Transposable Element families and genome annotations 2022-02-08 11:55:22 1 hg38, https://www.dfam.org/web_download/DfamHub/DfamHub.html
https://www.facebase.org/trackhub/hub.txt FaceBase Hub Comprehensive craniofacial research data from FaceBase.org 2016-12-16 13:49:31 4 mm9,mm10,hg18,hg19, https://www.facebase.org
https://www.lncipedia.org/trackhub/hub.txt LNCipedia 5.2 LNCipedia 5.2 - A comprehensive compendium of human long non-coding RNAs 2018-03-22 15:38:35 2 hg19,hg38, https://www.lncipedia.org/trackhub/docs/description.html