mRNA alignments (in all_mrna) as of Nov. 20, 2003

measurement hg17 hg16 hg15 hg13 mm4 mm3 rn3 rn2 sacCer1 galGal2
base query select acc from mrna where organism = 254 and type = "mRNA" select acc from mrna where organism = 285 and type = "mRNA" select acc from mrna where organism = 862 and type = "mRNA" select acc from mrna where organism = 2552 and type = "mRNA" select acc from mrna where (organism = 6464 || organism = 7141) and type = "mRNA"
candidates 171960 130,374 130,374 204 10,000
0 matches 29163 19,763 (15.15%) 19,637 (15.06%) 13 (6.4%) 494 (4.94%)
1 matches 134492 100,597 (77.16%) 102,368 (78.52%) 178 (7.3%) 8541 (85.41%)
2 matches 6577 7,834 (6.0%) 6,091 (4.676%) 4 736 (7.36%)
3 matches 1078 1,409 (1.08%) 1,468 (1.13%) 2 128 (1.28%)
4 matches 279 422 438 1 37
5 matches 109 150 161 18
6 matches 57 81 109 18
7 matches 44 69 37 1 5
8 matches 35 27 40 3
9 matches 27 23 26 1 2
10+ matches 99 0 0 4 (AB106599, K00952, K00948, K00950) 18

match percentages in all_mrna as of Nov. 20, 2003

measurement hg17 hg16 hg15 hg13 mm4 mm3 rn3 rn2 galGal2
candidates 171960 147854 138683 10000
50% or greater match 140246 (82%) 130055 (88.00%) 120995 (87.25%) 8995 (89.95%)
75% match 136844 (80%) 122606 (82.92%) 116437 (84.00%) 8320 (83.20%)
90% match 132087 (77%) 113754 (76.94%) 107351 (77.41%) 7420 (74.20%)
100% match 11004 (6%) 10282 (6.95%) 8869 (6.40%) 462 (4.62%)